Pairwise Alignments

Query, 308 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  182 bits (463), Expect = 1e-50
 Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 1/240 (0%)

Query: 39  LREELESLAPRALPVLIRGETGSGKELLARHIHRGSDRTGLFVSVNCGAISPTYADAELF 98
           L++ +   AP    VLI GE+G+GKEL+AR IH  S R G FV +NCGAI+P   ++ELF
Sbjct: 165 LKQRIVQFAPSRASVLIEGESGTGKELVARGIHEASGRQGPFVPINCGAIAPELLESELF 224

Query: 99  GYAAGSHSGTASSRAGWFGSANGGTLYLDEIGDLPLPIQVKLLAALENHEVTRVGAHQPS 158
           G+ +G+ +G   SR G F  ANGGTL+LDEIG++PL +Q  LL  LE   V  VG+ +  
Sbjct: 225 GHTSGAFTGAKKSREGLFRVANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEV 284

Query: 159 PVDVRLVAATSIDLAQAVAAGKFHERLFHYLSEGRLDLPALRERVGDILSLAEYFLGIYS 218
            VDVR+VAAT+ +L Q V  G+F   L++ L+  ++++  LRER  D+  L  +F  +  
Sbjct: 285 NVDVRVVAATNRNLQQEVENGRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLC 344

Query: 219 QRLDLPVPLISDAAQRVLEHHSWPGNTRELENVIHFALLVSSGDEILPEHLN-LPVAGSP 277
             L +P+P  +      ++ + WPGN REL+N+I   LL+          LN LP+   P
Sbjct: 345 AELGMPMPKWAYEDISSMQDYDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEP 404