Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  359 bits (921), Expect = e-103
 Identities = 232/644 (36%), Positives = 337/644 (52%), Gaps = 46/644 (7%)

Query: 18  DIDLQVLAFKGSEVLDQP---------FFIHIQVVSENPSLDLEALLHQPAYLAF---GE 65
           D  L V  F+G E L            F   + + S   +L  E  + Q A+L     G+
Sbjct: 15  DESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDGQ 74

Query: 66  ADDGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125
               ++G V  + + D G R T Y LTL P L  L+ R + RIFQQ+SVP+II+ +L++ 
Sbjct: 75  VVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEM 134

Query: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185
           GI  + YAF L       R FCVQY E+DL F+ R+  EEG+ Y   H    H L+F D 
Sbjct: 135 GI--EDYAFALKREC-AQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDS 191

Query: 186 QTVFPRL--PVQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAG 243
               P+L  PV  Y+A  G   + P +     +   +   T  +DY F+ P+        
Sbjct: 192 SDSQPKLAKPVP-YNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQ 250

Query: 244 ----AASTLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLE 299
               A      E +  P  +     GK  ++  LE  +RD   A  KSD+P+L +G   +
Sbjct: 251 GKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFD 310

Query: 300 IRDHPDPSCNDLWLITSVRHEGYQPQVLEE--ATPATDVFQGYRNRFTATP----WQAVH 353
           ++DH D + N  WL+    H+G QPQ L+E   + AT     Y N+    P    W+A  
Sbjct: 311 LQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT----YSNQLKLIPAHITWRA-- 364

Query: 354 RPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASG 413
           RP     KP ++G   ATV GP GE+++CD +GRVKV F WDR   +++KSSCW+RVA  
Sbjct: 365 RPC---AKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQE 421

Query: 414 WAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSS 473
           WAG  +G+  IPRVG EV+V+FL+GDPD+P+I G   +A +   Y LP HKT++VLR+ +
Sbjct: 422 WAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTET 481

Query: 474 SLGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSE 533
              G+G NEL  ED+ G E + L AQ+D +  I HD    +  ++   +     T ++  
Sbjct: 482 H-QGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRN 540

Query: 534 EHRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLK 593
           +H  V G+ +  +      +V    +  V Q + +EAG+++ LKSGA +V++AGAEL+LK
Sbjct: 541 QHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAGAELTLK 600

Query: 594 AGGEHLVIQAGGIFSSRPI--------ALGGSASVTQLAGAFRV 629
           AGG  + + AGG+    P         A  GSA   QLA A R+
Sbjct: 601 AGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAAAPRM 644