Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  375 bits (963), Expect = e-108
 Identities = 237/690 (34%), Positives = 363/690 (52%), Gaps = 59/690 (8%)

Query: 18  DIDLQVLAFKGSEVLDQPFFI---------HIQVVSENPSLDLEALLHQPAYLAF---GE 65
           D  L V  F G E L    F+          +Q+ S   +L  + ++ + A L      +
Sbjct: 15  DETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRAELKLYRNSQ 74

Query: 66  ADDGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125
               +HG V A  + D G   T Y LTL P L  L+ R + RIFQ+++VP+I++ +L++ 
Sbjct: 75  LVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEM 134

Query: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185
           GI   A+A +   V    R FCVQY ESD+ F+ RL  EEG+ Y F H    H L F D 
Sbjct: 135 GIHDYAFALKRDCV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDA 191

Query: 186 QTVFPRLPVQC-YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVH-LHDSAG 243
                +LP    Y+A  G   DTP I     R      +   +DY F+ P+   L    G
Sbjct: 192 SDSLSKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQG 251

Query: 244 AASTLPLEDYQY---PAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEI 300
                    YQ+   P  +     G   ++  L+  +R  + A G+S++P+LR+G+  ++
Sbjct: 252 TELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDL 311

Query: 301 RDHPDPSCNDLWLITSVRHEGYQPQVLEE--ATPATDVFQGYRNRFTATP----WQAVHR 354
           ++H DP+ N  W++ S+ H+G QPQ L+E   + AT     Y N+F+  P    W+A  +
Sbjct: 312 QEHLDPAMNRDWVVVSINHQGEQPQALQEEGGSGATT----YNNQFSLIPGHLHWRAEPQ 367

Query: 355 PSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGW 414
           P     KP ++G   ATV GP GE++ CD +GRVK+ F WDR    +++SSCW+RV+ GW
Sbjct: 368 P-----KPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGW 422

Query: 415 AGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSS 474
           AG  +G   IPR+G EV+V+FL+GDPD+P+I G   +A + P Y LP HKT++VLR+ + 
Sbjct: 423 AGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETH 482

Query: 475 LGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEE 534
             GEG NEL  ED+ G+E +YL AQ+D +  I +D    +  ++   +     T +K  +
Sbjct: 483 -QGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQ 541

Query: 535 HRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKA 594
           H  V G+ + L+K     ++ G  +  +    + +AG ++HLK+G  LV++AG EL++KA
Sbjct: 542 HLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKA 601

Query: 595 GGEHLVIQAGGIF---SSRPIALGGSASVTQLAGAFRVAGMP------------EVSKVQ 639
           GG  + + AGG+    S+  +  GGSA      G  ++A +P            E++ V 
Sbjct: 602 GGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGG-KMAELPQGVDKAKTPQEIELAAVT 660

Query: 640 GTIMNL-----ARQLGA--DYCPVCEHCRE 662
            T  ++     ARQ+ A     PVCE C E
Sbjct: 661 PTQQSMSPLLKARQIEALKGPAPVCEVCEE 690