Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  363 bits (931), Expect = e-104
 Identities = 218/627 (34%), Positives = 331/627 (52%), Gaps = 39/627 (6%)

Query: 18  DIDLQVLAFKGSEVLDQPFFI---------HIQVVSENPSLDLEALLHQPAYLAF---GE 65
           D  L V  F G E L    F+          +Q+ S   +L  E ++ + A L      +
Sbjct: 15  DETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQ 74

Query: 66  ADDGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125
               +HG V A  + D G   T Y LTL P L  L+ R + RIFQ+++VP+I++ +L++ 
Sbjct: 75  LVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEM 134

Query: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185
           GI   A+A +   V    R FCVQY ESD+ F+ RL  EEG+ Y F H    H L F D 
Sbjct: 135 GINDYAFALKRDGV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDA 191

Query: 186 QTVFPRLPVQC-YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVH-LHDSAG 243
                +LP    Y+A  G   DTP I     R      +   +DY F+ P+   L    G
Sbjct: 192 SDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQG 251

Query: 244 AASTLPLEDYQY---PAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEI 300
                    YQ+   P  +     G   ++  L+  +R  + A G+S++P+LR+G+  ++
Sbjct: 252 TELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDL 311

Query: 301 RDHPDPSCNDLWLITSVRHEGYQPQVLEE--ATPATDVFQGYRNRFTATP----WQAVHR 354
           ++H DP+ N  W++ S+ H+G QPQ L+E   + AT     Y N+F+  P    W+A  +
Sbjct: 312 QEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT----YSNQFSLIPGHLHWRAEPQ 367

Query: 355 PSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGW 414
           P     KP ++G   ATV GP GE++ CD +GRVK+ F WDR    +++SSCW+RV+ GW
Sbjct: 368 P-----KPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGW 422

Query: 415 AGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSS 474
           AG  +G   IPR+G EV+V FL+GDPD+P+I G   +A + P Y LP HKT++VLR+ + 
Sbjct: 423 AGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETH 482

Query: 475 LGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEE 534
             GEG NEL  ED+ G+E +YL AQ+D +  I +D    +  +    +     T +K  +
Sbjct: 483 -QGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQ 541

Query: 535 HRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKA 594
           H  V  + +  +     L + G       +  V EAG ++H+K+G  +VI+AG+E+++KA
Sbjct: 542 HLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAGSEITVKA 601

Query: 595 GGEHLVIQAGGIFSSRPIA---LGGSA 618
           GG  + +   G+  S  +     GGSA
Sbjct: 602 GGSFVKVDPAGVHLSGALVNLNSGGSA 628