Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 853 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

 Score =  207 bits (527), Expect = 2e-57
 Identities = 156/493 (31%), Positives = 242/493 (49%), Gaps = 35/493 (7%)

Query: 20  DLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDG---LHGQVYA 76
           +L + +F G+E L + F   + ++S +  L+L++ + QPA LA   A      ++G + A
Sbjct: 28  ELLLESFSGTESLSELFSFELSMISRDAGLELKSQIGQPAQLAIELATGESRYINGYISA 87

Query: 77  IGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFEL 136
              +       RY  TL+P L  L+ R D RIFQ++++  +I  V   +G L D + F+L
Sbjct: 88  FSLEGSDGGLARYSATLSPWLWMLSRRVDSRIFQEQTIEAVIRTVFAAYGALPD-FEFQL 146

Query: 137 GPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGD---DQTVFPRLP 193
              +    ++  QY ESDL F+ RL E EG+ ++F H+ + H L+  D   D +  P+ P
Sbjct: 147 SQPL-KTHSYITQYRESDLTFVLRLLEHEGLFFYFDHNQEKHTLIILDHSRDLSPLPQQP 205

Query: 194 -VQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLH------DSAGAAS 246
            ++ +SA     AD+    R   RL  +S +   + +D++ P   L       +  G   
Sbjct: 206 TIRYHSASVTETADSITEWRSHRRL--QSGRMSIQTFDYKQPRNSLPVGMPSLNEQGNVD 263

Query: 247 TLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIR---DH 303
           +  + D            G++L R+ LE  +       G S+   +  GH  E+    DH
Sbjct: 264 SYEVYDVLDHYSHGTFKDGERLVRQRLEAIEVQGKTFTGNSNCRAMYPGHTFELTQHFDH 323

Query: 304 PDPSCNDL-WLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATPWQAVHRPSLRHTKP 362
              S  D  +L+ +V+HEG    + +E         GY N F     +  +R  +   +P
Sbjct: 324 DRGSAEDRSFLLITVKHEGSNNYLSDEGA-------GYTNEFVCIRHKIPYRHPITVPRP 376

Query: 363 TINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGAT 422
           +ING  +A V GP GE+V  D   R++VRFHW R D    + + WLRVA   AG GFG  
Sbjct: 377 SINGPLSAIVVGPDGEEVFTDELARIQVRFHWQRGDSLP-QGTTWLRVAMPSAGSGFGHQ 435

Query: 423 MIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRP-----TYPLPLHKTRSVLRSSSSLGG 477
            +PR+G EVLVTFL GD DRPL+   L N ++ P        LP ++T S +R+     G
Sbjct: 436 FMPRIGQEVLVTFLAGDIDRPLVTSVLYNNINLPPRFSKASGLPGNRTLSGIRTQEH-KG 494

Query: 478 EGSNELYLEDRRG 490
            G NEL  +D  G
Sbjct: 495 SGFNELLFDDTPG 507