Pairwise Alignments

Query, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 941 a.a., Rhs element Vgr protein from Dechlorosoma suillum PS

 Score =  196 bits (498), Expect = 4e-54
 Identities = 169/544 (31%), Positives = 246/544 (45%), Gaps = 92/544 (16%)

Query: 27  KGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDG---LHGQVYAIGRDDPG 83
           +G E +   + + +  +S +  L+L+ L+ + A L    AD G   + G +     +   
Sbjct: 43  RGEESVSGDYRVEVGCLSPDTHLELKQLIGRIAELNLLLADGGHKTISGLIAEARHEGAD 102

Query: 84  RRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFELG-----P 138
              +R+ L + P L+ L HR + R+FQ +SVP+I+  +L +H      +A          
Sbjct: 103 GGFSRFALVIVPGLSLLTHRTNSRVFQDKSVPEIVHTLLSEHRDAGGPWAAACRWQNRLA 162

Query: 139 VVYPPRTFCVQYAESDLHFIQRLCEEEGI--HYHFRH----------SVDAHLLVFGDDQ 186
             YP R++C+QY ESD  FI+RL  EEGI   Y F+           +   H LV  DD 
Sbjct: 163 KDYPQRSYCLQYRESDRDFIRRLLAEEGIATRYEFQEEDSSGQRQDDATPLHTLVLFDDP 222

Query: 187 ---TVFPRLPVQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDF--------EHPS 235
              T   +  ++ + A     AD+  +  +D    +RS K+    +D+        + P 
Sbjct: 223 YEPTPAQQEKIRFHRADASEEADS--LTAWDTARRLRSGKSQLLAWDYKPVTPLQADAPG 280

Query: 236 VHLHDSAGAASTLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRAL----GKSDQPV 291
                  G      LE Y   A +  +        R  +L Q  R RA     G+S    
Sbjct: 281 TTDQGEQGGQVESRLEAYDPQAHY--YGADNDDLSRYTQLRQDSRDRAAKDYQGQSSVRG 338

Query: 292 LRSGHFLEIRDHP------DPSCNDLWLITSVRHEGYQ-----PQVLEEATP-------- 332
           L +G + ++ DHP      D S   L     VRH  +      P  L +  P        
Sbjct: 339 LTAGQWFQLEDHPRHEGEDDDSRRFL-----VRHLNWHARNNLPGDLTDGLPGLLASAAG 393

Query: 333 ----ATDVF-----QGYRNRFTA----TPWQAVHRPSLRHTKPTINGSQTATVTGPAGED 379
               A+D       Q YRN FTA    TP    + P   + KPT  G QTATV GP GE+
Sbjct: 394 QHGTASDAAGATGDQPYRNTFTAVRRDTPIAPDYAP---YQKPTAKGPQTATVVGPQGEE 450

Query: 380 VHCDVYGRVKVRFHWDRLDE-------ADDKSSCWLRVASGWAGDGFGATMIPRVGMEVL 432
           +H D  GR+K++FHW R  +        DD+SSCW+RVA  W G  +G   +PR+G EVL
Sbjct: 451 IHTDDLGRIKIQFHWAREQDHPDGGAALDDRSSCWIRVAVPWGGANWGHQYLPRIGQEVL 510

Query: 433 VTFLDGDPDRPLINGCLPNALHR-PTY----PLPLHKTRSVLRSSSSLGGEGSNELYLED 487
           V FL+GD DRP++   L N  HR PTY     LP ++T + ++ S    G G NEL  +D
Sbjct: 511 VEFLEGDIDRPVVMAGLYNGSHRPPTYSGAGSLPANRTLAGIK-SKEYKGNGYNELLFDD 569

Query: 488 RRGE 491
             GE
Sbjct: 570 STGE 573