Pairwise Alignments

Query, 334 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 358 a.a., AraC-type DNA-binding domain-containing protein from Marinobacter adhaerens HP15

 Score =  130 bits (328), Expect = 4e-35
 Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 7/331 (2%)

Query: 4   PTSLASWTRALRKQLDALGLDSAALCLQ-AGLDPQKMDDPNARYPLSATTRLWELAVQAS 62
           P   AS T AL   L+  G+ +A    Q  GL   ++ DP+ R P  A  RLWE A   +
Sbjct: 12  PLVAASSTLALVHYLERQGVLNAPRVEQLTGLAMSELTDPDRRVPADAHYRLWEHAELVT 71

Query: 63  GDPAIGLRVSRFVSATTFHALGYALVASGSLREVFERIVRYHQVVSDALSLELSGDGERY 122
           GDPA+GL   + V       +G+      +L E   + VR H+++++++ L      ++ 
Sbjct: 72  GDPAVGLHAGKVVDPERMGLVGHVFFNCDTLGEAVTQYVRLHRLINESVFLSFEQTADQ- 130

Query: 123 RFRLLQLPGSPAPAF--EAIDAFAAIYVRTCRNRLGREYAPLAVYLRRPEPVDPKPWHTV 180
              +L      A  +  + +D   A  +   R+ +        V +  P PV    +  +
Sbjct: 131 --AILCWQPDMAEHYCRQDMDRTLAAAITRTRHFIHPGIRAEWVEIAHPAPVYAAEYEKL 188

Query: 181 FRAPVFFDAEEDRLEFAAADFDSHLDDANPELAEHNETVLKRTLAQLQPL-TWERKVRAA 239
              PV FD    RL F +      +   NP +       +   LA+LQ   ++ R++R  
Sbjct: 189 LGGPVRFDCGITRLAFNSRHLGHPIPRRNPYVYSAVLKQVNTLLARLQSRRSFGRRIRRL 248

Query: 240 IEAQLPDGEPSAERIAQALHLSLRSLQRHLADEGCRFDALLSECRENLALLHLRDPHCSL 299
           I  Q+      A+ +A+  H+S ++L R L  EG  F  L+ + R++ AL ++     +L
Sbjct: 249 ISKQMATERIDADSLARQCHMSRQTLYRKLKKEGLSFHGLVEQVRQDKALRYVAADQYAL 308

Query: 300 AEISHLLGFADTSSFNRAFKRWTGMTPGQFR 330
            EI+ LLGF++ S+F+RAFKRWTG +P ++R
Sbjct: 309 GEIAFLLGFSELSAFSRAFKRWTGTSPAEYR 339