Pairwise Alignments

Query, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score = 84.7 bits (208), Expect = 7e-22
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 1   MIPQPPRRTGFFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVL--ESKSSEVEQPRAYL 58
           M+ Q      + +H+  L G   R+L   Q+A DLA DTFVRV+  +     + +PRAYL
Sbjct: 6   MVRQQMLHRLYSDHHGWLNGWLRRQLGCSQRAADLAQDTFVRVMTKDEDMGAIREPRAYL 65

Query: 59  HQTARNIAVDAYRREDRREAITLEAFDQRSPNSGDPEHFMHAIQLADSIERALSELPLNC 118
           H  A+ + ++ +RR    +A       Q    +  PE     ++    I+  L++LP   
Sbjct: 66  HTIAKGLLINHWRRRQIEQAYLDALALQPELVAPSPESQALIVETLLQIDAMLAQLPAKV 125

Query: 119 RKIFIWQKIEGLTQQEIAERLGLSKNMVEKYMIRTLRH 156
           R+ F+  +++G+T   IA  LG+S+ MV+KYM + + H
Sbjct: 126 RRAFLMSQLQGMTYAAIAAELGVSERMVKKYMAQAMLH 163