Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

 Score = 89.7 bits (221), Expect = 2e-23
 Identities = 59/155 (38%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 9   HAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQPRAYLSSIA 68
           H+  GQ + +H + L  +L+R+  C E AADL QET++R       Q +   RA+L  IA
Sbjct: 8   HSTDGQ-FESHSSELLHFLTRQVKCAELAADLRQETWLRFRRRESGQEIGNLRAFLYRIA 66

Query: 69  RSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQLKPRVREAF 128
           R+L+ID YRR++  R   E L+       P  E        LER+ R++  L P +R+A 
Sbjct: 67  RNLIID-YRRQQKSRPVEEELSIELVSAQPGPERAASDAQRLERLQRVVQDLPPHLRQAL 125

Query: 129 LLAQLDGLTCAQIALRLGVSKATVERDLSKALHAC 163
              +LDGLT  +I  RLGVS++   R + KAL  C
Sbjct: 126 FWNRLDGLTQREIGERLGVSESMAGRYILKALEHC 160