Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., Sigma-70 region 2 from Pseudomonas syringae pv. syringae B728a

 Score =  141 bits (356), Expect = 5e-39
 Identities = 75/164 (45%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 1   MSSDHPLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQ-QTLQQ 59
           M+    L    +  LY  HH WL  WL RR G    AADL+Q+TF+R+L++ +Q   +Q+
Sbjct: 1   MTDAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQE 60

Query: 60  PRAYLSSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQ 119
           PRAYL ++ + L+ + Y RR LE+AYLE+LA  P+  VPS E R L+L++L+ +D LLD 
Sbjct: 61  PRAYLLTVGKRLLSNFYTRRSLEQAYLEALAQLPEESVPSPEQRWLLLETLQALDELLDG 120

Query: 120 LKPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHAC 163
           L   VR AFL +QL+GL   +IA RL VS+ TV+R +++A   C
Sbjct: 121 LSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQAYEHC 164