Pairwise Alignments

Query, 469 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 525 a.a., lipid II flippase MurJ from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (257), Expect = 1e-26
 Identities = 130/500 (26%), Positives = 216/500 (43%), Gaps = 45/500 (9%)

Query: 1   MLGSAAWLTLATLLGLCLGFAREWLLVAAWGAGERSDAFLIALFLPEALRMSLAGGVLSA 60
           +L S   ++  TL+   LG  R+ ++    GAG  +D F  A  +P  LR   A G  S 
Sbjct: 10  LLKSGIIVSAMTLISRVLGLVRDVVVANLMGAGASADVFFFANRIPNFLRRLFAEGAFSQ 69

Query: 61  AALPL---YLARKDDERL--------GWLAALFPALLLIALVTSLLLTLL--APWLVQLL 107
           A +P+   Y A  D  +         G L  L   + LI ++ S  +T L  A W +  L
Sbjct: 70  AFVPVLTEYHASGDINKTRDLIARASGTLGVLVTIVTLIGVLGSGAVTALFGAGWFLDWL 129

Query: 108 GPGLAASATALASSNLQIVAWCVPGLMLHALFSIPLQASERFVLAGLGSLLFNLPPVTYL 167
             G AA    LAS  L+I    +  +   AL    L    +F ++    +  N+  +   
Sbjct: 130 NGGPAAGKFELASLLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNVMMILCA 189

Query: 168 -ALAGTATQPH-ALALACLAGSLLMPLALLPSMWRQG--WRP-WCWQLPWAPLRELGQRI 222
             L+    QP   LA+    G L+  L  LP + + G   RP W W+ P   + ++   +
Sbjct: 190 WYLSPNLEQPEVGLAIGVFLGGLVQFLFQLPFLIKAGVLVRPKWGWKDP--GVVKIRTLM 247

Query: 223 GPLLLSNGASQGLALIERLVASLLGEGAVTWVNLARKLMNLPL-IALMSLNQVLLGMMSR 281
            P L     SQ   L +  VAS L  G+++W+  + +L+  PL +  +++  V+L  +SR
Sbjct: 248 IPALFGVSVSQINLLFDSFVASFLQTGSISWLYYSDRLLEFPLGLFGIAIATVILPALSR 307

Query: 282 RQGDER----LALLKRGLETASVLTLPAGVGL-VAAAPSLVALLLPAQSLDSPLP----L 332
           +  D         +  G+   + L +PA +GL V A P L+ L +  +   S +      
Sbjct: 308 KHVDAHSDGFAHTMDWGIRMVTFLGIPAMLGLMVLAKPMLMVLFMRGEFTPSDVEQASYS 367

Query: 333 LLAWFAVPLVFGAWNALLARYAYAAGDTRQPLRCELLGSLVNALLLGVLPFVFGLAGIPL 392
           LLA+ +  L F     L   Y Y+  DT+ P+R  ++  + N +L  +  + +G  G+ +
Sbjct: 368 LLAYSSGLLSFMLIKVLAPGY-YSRQDTKTPVRYGIIAMVSNIVLNAIFAWFYGYVGLAV 426

Query: 393 AALAGVICTALLLMQRQALLSALPWARS--WLLNAVLMGVAALA---LFRIE--GVWLQL 445
           A          LL +   L       R   W +  + M  A +    L++++    WL  
Sbjct: 427 ATSMSAFLNMALLYRGLHLQGVYHLTRKTVWFVARLAMAGAVMTGALLWQLDTMATWLSW 486

Query: 446 GLS----TLAGAVVLLGMGL 461
           G+S    TL G   L+G+G+
Sbjct: 487 GISQRALTLTG---LIGLGV 503