Pairwise Alignments

Query, 785 a.a., DNA polymerase II from Pseudomonas simiae WCS417

Subject, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

 Score =  796 bits (2055), Expect = 0.0
 Identities = 411/792 (51%), Positives = 544/792 (68%), Gaps = 12/792 (1%)

Query: 1   MDLQQGFVLTRHWRDTPAGTEVSFWLATDQGPRFIRLPVQTSVMFIPEAHRKPLDWLLKG 60
           M ++QGFVLTRH RD    T++  WLAT  GP  + +  +  V FI ++  + +   +  
Sbjct: 1   MKIEQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEV-MRIAA 59

Query: 61  ERDI--ELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMME 118
           E  I   L PL L  F  +P+   Y    R +  + ++L  A + + E D+R  +R++ME
Sbjct: 60  ELSITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLME 119

Query: 119 RFITAPVWFGGTPDATGVLCDAQMKPAP--DYRPPLKLVSLDIETTAQGDLYSIALEGCG 176
           RFI   + F G     G     Q       DY P L +VSLDIE + +G LYSI L+   
Sbjct: 120 RFIQGSIEFTGQITDFGHYRQVQQAKCRQGDYLPTLNMVSLDIECSEKGLLYSIGLDSPM 179

Query: 177 ERQVYMLGPPNKPAAVDFKLDYCDTRAQLLERLNQWLALHDPDAIIGWNVVQFDLRVLHE 236
           + +V M+G P +PA  +  + + +   QLL+ L  W    DPD IIGW+VV FD R+LH+
Sbjct: 180 DSRVIMIGQP-EPA--ETPIQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHK 236

Query: 237 HAQRLNVPLMLGRGEEPMAWREHGSRNHYFAAAAGRLIIDGIEALRSATWSFESFSLENV 296
            A+   + L +GR ++P  +R        F +  GR+++DGI+ L++AT+ F S+SLE+V
Sbjct: 237 RAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESV 296

Query: 297 AQTLLGEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERA 356
           +Q LLGEGK I   + RMDEIN+MF  DKP+LARYNL+DC LV +IF  T LL F ++R+
Sbjct: 297 SQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRS 356

Query: 357 SVTGLPADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGLYESVL 416
            +TG+  DR GGSVAAFT+LY+P +HR G+VAPNL  +   ASPGG+VMDS PGLY+SVL
Sbjct: 357 RLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDSVL 416

Query: 417 VLDYKSLYPSIIRSFLIDPVGLIEGLKHP---DDSESVEGFRGARFSRTRHCLPSIVARV 473
           VLD+KSLYPSIIRSFLIDP+GLIEGLK P       +V GFRG +F RT+H LP ++ ++
Sbjct: 417 VLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIEKL 476

Query: 474 SEGREVAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTREL 533
              R+ AKR      SQA+KIIMN+FYGVLGSSGCRFFD RLASSITMRGH+IM QT+ L
Sbjct: 477 WAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRL 536

Query: 534 VEAQGYEVIYGDTDSTFVWLGSAHGQEDAGRIGRALVQHVNDWWREHLQTAFGLQSALEL 593
           +EA+GY+VIYGDTDSTFV LG  + Q++A  IG ALV+ +N WW EHL+  + L S LEL
Sbjct: 537 IEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILEL 596

Query: 594 QYETHFTRFLMPTIRGAEEGSKKRYAGLVVHSDGREEMVYKGLETVRSDWSPLARRFQQE 653
           +YETH+ RFLMPTIRG+E GSKKRYAGL    D  E++++KGLE+ R+DW+PLA+RFQ +
Sbjct: 597 EYETHYRRFLMPTIRGSETGSKKRYAGLKGDGD-NEQLIFKGLESARTDWTPLAQRFQHQ 655

Query: 654 LYQRIFHRQPHQDYIRDYVRLTLSGEFDELLIYRKRLRRQLDDYERNVPPHVRAARLADE 713
           LYQ IFH Q  + YIR  V  TL+G+ D+ L+Y+KRLRR+L +Y++NVPP VRAAR+AD+
Sbjct: 656 LYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMADD 715

Query: 714 YNDRMNRPRQYQRGGWISYVISVNGPEPLEVRHAPIDYDHYVTRQLQPVADAILPFVNDD 773
            N ++ RP QYQ  G I YVI+VNGPEP E   +PIDY HY+ +QL+PVADAILPF+   
Sbjct: 716 INAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIGKQ 775

Query: 774 FSTLVGGQMGLF 785
           F  L+  Q+GLF
Sbjct: 776 FDELIAPQLGLF 787