Pairwise Alignments

Query, 785 a.a., DNA polymerase II from Pseudomonas simiae WCS417

Subject, 784 a.a., DNA-directed DNA polymerase from Methanococcus maripaludis S2

 Score =  133 bits (334), Expect = 4e-35
 Identities = 138/599 (23%), Positives = 263/599 (43%), Gaps = 68/599 (11%)

Query: 195 KLDYCDTRAQLLERLNQWLALHDPDAIIGWNVVQFDLRVLHEHAQRLNVPLMLGRGEEPM 254
           KL+Y     +L++R+ +   L + D I  +N   FD   L + A+   + L LG+ +E +
Sbjct: 192 KLEYVKDEKELIKRIIE--ILKEYDIIYTYNGDNFDFPYLKKRAESFGLELKLGKNDEKI 249

Query: 255 AWREHGSRNHYFAAAAGRLIIDGIEALRSATWSFESFSLENVAQTLLGEGKDISTPYQRM 314
              + G  +  +    GR+ ID +  +     +   + LENV + L     D+       
Sbjct: 250 KITKGGMNSKSYIP--GRVHID-LYPIARRLLNLTKYRLENVTEALF----DVKKVDVGH 302

Query: 315 DEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERASVTGLPADRNGGSVAAFT 374
           + I +M+      L  Y+ +D     RI E+   L+ +  R     L       S     
Sbjct: 303 ENIPKMWDNLDETLVEYSHQDAYYTQRIGEQFLPLEIMFSRVVNQSLYDINRMSSSQMVE 362

Query: 375 HLYMPLMHRQGFVAPNLGD------KPPQASPGGFVMDSRPGLYESVLVLDYKSLYPSII 428
           +L +   ++ G +APN         +   +  GG+V +   G++E ++ +D+ SLYPSII
Sbjct: 363 YLLLKNSYKMGVIAPNRPSGKEYQKRIRSSYEGGYVKEPLKGIHEDIVSMDFLSLYPSII 422

Query: 429 RSFLIDPVGLIEGLKHPDDSESVEGFRGARFSRTR-----HCLPSIVARVSEGREVAKRE 483
            S  + P  +       +++   E   G +F +         L  ++ R  + ++V + +
Sbjct: 423 MSHNLSPETIDCTCCSDEENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLREK 482

Query: 484 HNAP-----------LSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTRE 532
                            +++K++ N+ YG L     R++    A   T  G Q +++T E
Sbjct: 483 AEKGEFDEEYQILDYEQRSIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIE 542

Query: 533 LVEAQGYEVIYGDTDSTFVWLGSAHGQEDAGRIGR-ALVQHVNDWWREHLQTAFGLQSAL 591
             E  G++VIY DTD  +     +   +D  ++ +  L++   ++ +    T   L   +
Sbjct: 543 EAENFGFKVIYADTDGFY-----SKWADDKEKLSKYELLEKTREFLKNINNT---LPGEM 594

Query: 592 ELQYETHFTRFLMPTIRGAEEGSKKRYAGLVVHSDGREEMVYKGLETVRSDWSPLARRFQ 651
           EL++E +F R +  T        KK+YA +    D  E++  KGLE VR DWS +++  Q
Sbjct: 595 ELEFEGYFKRGIFVT--------KKKYALI----DENEKITVKGLEVVRRDWSNVSKNTQ 642

Query: 652 QELYQRIFHR---QPHQDYIRDYVRLTLSGEF-DELLIYRKRLRRQLDDYERNVPPHVRA 707
           + +   +      +  +  I+D ++    G+  +E L+   +L ++++DY +   PHV  
Sbjct: 643 KNVLNALLKEGSVENAKKVIQDTIKELKDGKVNNEDLLIHTQLTKRIEDY-KTTAPHVEV 701

Query: 708 ARLADEYNDRMNRPRQYQRGGWISYVISVNG---PEPLEVRHAPIDYD--HYVTRQLQP 761
           A+   +  +R+N       G  ISY+I+       E  E+     +YD  +Y+  Q+ P
Sbjct: 702 AKKILKSGNRVN------TGDVISYIITSGNKSISERAEILENAKNYDTNYYIENQILP 754