Pairwise Alignments

Query, 704 a.a., peptidase S41 from Pseudomonas simiae WCS417

Subject, 682 a.a., carboxyl-terminal protease (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  481 bits (1239), Expect = e-140
 Identities = 289/702 (41%), Positives = 413/702 (58%), Gaps = 42/702 (5%)

Query: 12  MKHLFPSTALALFIGLGFASMSTN-TFAANSWDNLQPDRDEVIASLNVVELLKRHHYSKP 70
           M+ L  +T++A  + +GF++ +   T   +    L+ +    +AS  V +L  R HY + 
Sbjct: 2   MRKLILATSIAT-VFVGFSAWAVPPTIQISELPTLKQEAQHKVASKRVTDLYTRSHYHRF 60

Query: 71  PLDDARSVIIYDSYLKLLDPSRSYFLASDIAEFDKWKTQFDDFLKSGDLQPAFTIYKRYL 130
            LDDA S  I+D YL+ LD  R+    +D+  F  +  QFDD L SG+L PA+ ++    
Sbjct: 61  ALDDAFSAQIFDRYLQQLDYRRNVLTQADVDSFKPYINQFDDMLSSGELDPAYKMFDLVQ 120

Query: 131 DRVKARLDFALGQLDKGVDKLDFTQKETLL-VDRKDAPWLTSTAALDDLWRKRVKDEVLR 189
            R      +AL  LDK   ++DFT    +   DR+D  W    A +++LWR+RVK + L 
Sbjct: 121 KRRYEGFVYALSLLDK---EMDFTAPGDVYDYDREDVAWPKDQAEINELWRQRVKYDALN 177

Query: 190 LKIAGKEPKAIQELLTKRYKNQLARLDQTRAEDIFQAYINTFAMSYDPHTNYLSPDNAEN 249
           LK+ GK+   I ++L KRY N + RL QT +ED+FQA +N F+ S +PHT+YLSP NAE 
Sbjct: 178 LKLTGKKWLEIVDILQKRYNNAIKRLTQTNSEDVFQAVMNAFSRSIEPHTSYLSPRNAER 237

Query: 250 FDINMSLSLEGIGAVLQSDNDQVKIVRLVPAGPADKTKQVAPADKIIGVAQGDKEMVDVV 309
           F + M+LSLEGIGA LQ ++D   I  L+  GPA  +++++P DKI+GV Q   E+VDV+
Sbjct: 238 FQMEMNLSLEGIGAQLQLEDDYTVIKSLIAGGPAAGSEKLSPEDKIVGVGQEGGEIVDVI 297

Query: 310 GWRLDEVVKLIRGPKGSVVRLEVIPHTNAPNDQTSKIVSITREAVKLEDQAVQKKVLNLK 369
           GWRLD+VV+LI+GPKGS V L+++P     N +    V++ R+ ++LED+A   K++  K
Sbjct: 298 GWRLDDVVELIKGPKGSKVVLQILPKKGGSNAKPFN-VTLVRDKIRLEDRAATSKIIEPK 356

Query: 370 QDG--KDYKLGVIEIPAFYLDFKAFRAGDPDYKSTTRDVKKILTELQKEKVDGVVIDLRN 427
            DG   + K+GVI+IP FY++              ++DV+K L +L + KV+GVVIDLR 
Sbjct: 357 -DGVYANRKVGVIQIPGFYMNL-------------SQDVEKELLKLNEAKVEGVVIDLRG 402

Query: 428 NGGGSLQEATELTSLFIDKGPTVLVRNADGRVDVLEDENPGAFYKGPMALLVNRLSASAS 487
           NGGG+L EA  LT LFID GP V VR+ADGRV    D +    Y GP+ ++V+R SASAS
Sbjct: 403 NGGGALTEAVLLTGLFIDMGPVVQVRDADGRVSAHRDNDGKTTYTGPLTVMVDRYSASAS 462

Query: 488 EIFAGAMQDYHRAMIIGGQTFGKGTVQTIQPLNH---------GELKLTLAKFYRVSGQS 538
           EIFA A+QDY RA+I+G  +FGKGTVQ  + L           G ++ T+ KFYR++G S
Sbjct: 463 EIFAAALQDYDRALIVGESSFGKGTVQQHKSLGRIYDMYEKPIGHVQYTIQKFYRINGGS 522

Query: 539 TQHQGVLPDIDFPSIIDTKEIGESALPEAMPWDTIRPAIKPASDPFKP-FLAQLKADHDT 597
           TQ +GV P+I +PS ++  E GE+    A+PWD +  A     +   P  +A L+  H  
Sbjct: 523 TQLKGVTPNIAYPSALEPGEYGEAEEKNALPWDKVPMAQYGTLNDITPELVASLEKKHLA 582

Query: 598 RSAKDAEFVFIRDKLALAKKLMEEKTVSLNEVDRRAQHADIENKQLALENIRRKAKGEDP 657
           R     EF +I   +A  KK  +EKTVSL E +R A     E K L   N RR A G  P
Sbjct: 583 RIQNSVEFNYINQDIADFKKHHKEKTVSLVESERIASREADEKKVLDRTNERRVANGLAP 642

Query: 658 LKELKKEDEDALPTEAEKTKPEDDAYLAETGRILLDYLKITK 699
           +K ++   +D +           DA+L ET  I LD +   K
Sbjct: 643 VKSMEDIKDDVV---------APDAFLDETAYITLDMVDAKK 675