Pairwise Alignments

Query, 527 a.a., BCCT transporter from Pseudomonas simiae WCS417

Subject, 688 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

 Score =  231 bits (589), Expect = 7e-65
 Identities = 141/487 (28%), Positives = 246/487 (50%), Gaps = 13/487 (2%)

Query: 5   LRPLVFWPTFLILLAAVIASYIDLNAFLAVSKQLNNLILKNFSWLFSAGSFAMVVLTAIV 64
           + P+VF+ + + ++   + +    +  LAV   +   I   F W +       ++   +V
Sbjct: 18  INPVVFYGSAIAIVLFAVWTMFFTDRSLAVINTVLGWISNTFGWFYFLAVLLYLLFVVVV 77

Query: 65  YFSALGKVRIGGEDAQPLLSKWRWFMVALCTTLAVGVLFWTTAEPLYHLYGPPTSLPIEA 124
             S  GK+R+G + ++P  +   W  +     + + +LF+  AEP+     PP     E 
Sbjct: 78  ATSRYGKIRLGPDHSKPEFNVVTWAAMLFSAGIGIDLLFFCIAEPITQFLEPPVG---EG 134

Query: 125 GSSAAKTFAMSTMFLHWTITPYAIYLVPSLVFALVFYNRRSNFSIGAMLEPLLGEARVKR 184
           GS+ A   AM   FLHW ++ + +Y +  +  A   + +    SI + L P+ G+     
Sbjct: 135 GSTQAARHAMELTFLHWGLSGWGVYTLVGMSLAYFSFRQGLPLSIRSSLYPIFGKRIYGP 194

Query: 185 YAGLIDTLAMFALVAGMASSLGTGALTLAGGLAQYIGGETTPLRLAIIIAIIVITFVASA 244
               +DT A+   + G+A+SLG G + L  GL    G     L  A+++ +IV+    SA
Sbjct: 195 IGHTVDTAAVLGTIFGIATSLGIGIIQLNFGLNYIFGIPEGTLTQAVLVVLIVVFSAISA 254

Query: 245 ASGLQKGIVMLSSFNTWIMLALGLFVLLCGPTLYMFSLGVESLGVYLDTFFSRSLFTGAA 304
           A+G+++GI  LS FN  + + L LFVL+ G T+++ +  V ++G Y   F S SL T A 
Sbjct: 255 ATGVERGIRRLSEFNMLLAVLLLLFVLVVGDTVFLLNALVMNVGDYFSNFISLSLDTYAY 314

Query: 305 SGDT-WPHSWTVFYWSVWFAWAPVSALFLGKIGRGYTVREFIHINMLYPALFTAVWICIF 363
              T W ++WTVF+W+ W AW P   LFL +I RG T+REF+   +L P  F   W+ I 
Sbjct: 315 RRPTDWLNAWTVFFWAWWIAWGPFVGLFLARISRGRTIREFVIGTLLLPLAFMMAWMSIM 374

Query: 364 SGTSLYFDALGDGSLNRVLNEQGVEH---VLYQMFQQLPASGLMIAFLLFVAFISFVTAA 420
             +++  + +  G+L     +Q V +    +Y   Q LP +GL    +  +A + FVT+ 
Sbjct: 375 GNSAI--EMVMGGALE--FGQQAVSNPGSSIYLFLQSLPWAGLTTIVVTILAIVFFVTSG 430

Query: 421 DSSTDVIANLCSKGVTADSDLDGNPALKIVWGVIIGSVSWVMVSFVGIDGVKMLSNLGGL 480
           DS + V++N  S  +  D + D    ++I+W  IIG ++  ++   G+  ++    + GL
Sbjct: 431 DSGSLVLSNFTS--ILKDVNSDAPVWMRILWAAIIGVLTLALLIAGGLTALQGTVVIMGL 488

Query: 481 PGMLLVL 487
           P  +++L
Sbjct: 489 PFSIVLL 495