Pairwise Alignments

Query, 333 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 1037 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC sensor from Synechococcus elongatus PCC 7942

 Score =  142 bits (357), Expect = 5e-38
 Identities = 96/319 (30%), Positives = 161/319 (50%), Gaps = 16/319 (5%)

Query: 26   LALVHAQGEVERLSEREQLLSSMLVSVNAVLWAMDWETRRVLYVSPAYERVFGRSAGLLL 85
            L  V A  +V    + +Q L   LV    +  A+D  +  +      +  ++   + L  
Sbjct: 711  LGAVIAMRDVTAERKTKQQLQEALVEAQRLRAALDQVSSHIYMKDLQFRYIYANRSALDF 770

Query: 86   ADHREWRNSIHPEDLDYAEHSLARVLERGAVEDREYR----------IITADGQIR-WLS 134
             D R     +  +D  +     A++L+  A++ R ++          +   DGQ+R +L 
Sbjct: 771  VD-RSLEEILGKDDFFFFSEEAAKLLQ--AIDSRVFQGEQTTEEIHLVNPKDGQLRVYLE 827

Query: 135  DKCYINQRVEPGEPLIVVGMAEDITEKKQMELELHRLATTDVLTQSSNRRHFFECANLAF 194
             K  I +  +    + ++G++ DITE+K++E +L + ATTD LT   NRR F   A    
Sbjct: 828  IKTPIYESAQSSNIIGLLGISTDITEQKKLEQKLQQQATTDALTGILNRRQFITLAQAEL 887

Query: 195  DTA--CAKGEPLAFLLLDIDDFKDVNDSYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGG 252
            +      +   L+ +++DID FK +NDSYGH  GDQVL       +  +R  D+F R+GG
Sbjct: 888  NRIYRIQRDTSLSLVIIDIDHFKTINDSYGHTVGDQVLILWTNICQQNIREVDIFARLGG 947

Query: 253  EEFAAVLPGCAPEMALQVAERLGREIQELSFSYEGQAFSVTISQGLASLTEADSTLDSLF 312
            +EF  +LP    + A QV +R+ + + + S     QA ++TIS G+A  T    TLD   
Sbjct: 948  DEFVLMLPETNGKQAYQVMDRIRQLVIQQSLHLPQQAIAITISVGIAVWTPEILTLDQFL 1007

Query: 313  ARADAAMYEAKRLGKNRVV 331
             RAD A+Y+AK+ G++R++
Sbjct: 1008 ERADRALYQAKQQGRDRII 1026



 Score = 42.4 bits (98), Expect = 5e-08
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 38  LSEREQLLSSMLVSVNAVLWAMDWETRRVLYVSPAYERVFGRSAGLLLADHREWRNSIHP 97
           L + E+ L        A +W  D  T  + + S + E + G   G +      + + +HP
Sbjct: 343 LRQSEERLELAFQGSLAAIWDWDLVTSDLYFSSRSLE-ILGYQEGDIPPKISSFFSLLHP 401

Query: 98  EDLDYAEHSL-ARVLERGAVEDREYRIITADGQIRWLSDKCYINQRVEPGEPLIVVGMAE 156
           +D  + + +L A         D EYRI    G+ RW      I  R E  +P  +VG   
Sbjct: 402 DDRIFVQSALDAHFSSAKYPYDVEYRIQQKSGEYRWFQSTG-IAVRDEQNKPYRMVGSTI 460

Query: 157 DITEKKQME 165
           DIT +KQ E
Sbjct: 461 DITRRKQAE 469



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 24/145 (16%)

Query: 36  ERLSEREQLLSSMLVSVNAVLWAMDWETRRVLYVSPAYERVFGRSA----------GLLL 85
           E L E EQ   +++ S + ++W  D +     Y +  +    GRS           G+L 
Sbjct: 470 EALRESEQNYRTVVNSGHVLIWLAD-KNGDHYYFNSVWLNFTGRSLEQELDSGSIEGVLS 528

Query: 86  ADHREWRNSIHPEDLDYAEHSLARVLERGAVEDREYRIITADGQIRWLSDKCYINQRVEP 145
           AD + + ++       +++H+  +          EYR+   DG+ RW+ ++         
Sbjct: 529 ADLQSYLSNYRTA---FSQHNSYKA---------EYRLRRHDGEYRWILEEGSPRYDTH- 575

Query: 146 GEPLIVVGMAEDITEKKQMELELHR 170
           G  +  +G   DI ++K  E  L+R
Sbjct: 576 GNFIGYIGHCLDIHDRKIAETALYR 600