Pairwise Alignments

Query, 333 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 730 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  157 bits (398), Expect = 6e-43
 Identities = 110/306 (35%), Positives = 151/306 (49%), Gaps = 14/306 (4%)

Query: 35  VERLSEREQLLSSMLVSVNAVL--WAMDWETRRVLYVSPAYERVFGRSAGLLLADHREWR 92
           VE L   E  L +M  +V  V+  W      R+  YVSP    + G     LL D   WR
Sbjct: 406 VEELRTSEARLRAMAATVPGVVLQWREVPGDRQFTYVSPRSREILGVPPEWLLQD---WR 462

Query: 93  N-SIHPEDLDYAEHSLARVLERGAVEDREYRIITADGQIRWLSDKCYINQRVEPGEP--- 148
              +HP D    E SL   +ER      E R++   G++RW   +       + G     
Sbjct: 463 ALPVHPADRTVWELSLRDAMERRGDWMFEGRLVLPGGEVRWWRGEARPVHGGQSGAAELP 522

Query: 149 ----LIVVGMAEDITEKKQMELELHRLATTDVLTQSSNRRHFFECANLAFDTACAKGEPL 204
               ++  G+  D TE ++ +  L +LATTD LT  +NRR F E            G PL
Sbjct: 523 EESGIVYCGIITDTTEHREAQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPL 582

Query: 205 AFLLLDIDDFKDVNDSYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCAP 264
           A + +D+D FK VND++GH  GD+VLR +A   R  +R  D  GRIGGEEFA +LP  AP
Sbjct: 583 ALISIDVDRFKRVNDTWGHAVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAP 642

Query: 265 EMALQVAERLGREIQELSFSYEGQAFSVTISQGLASLTEADSTLDSLFARADAAMYEAKR 324
           E A+ VAERL   ++           +VT+S G+++    D   D+L   AD A+Y AK 
Sbjct: 643 EEAMAVAERLRAGVEAAPLLTTAGPLTVTLSLGVSASPPCDGA-DTLLREADRALYRAKA 701

Query: 325 LGKNRV 330
            G+NRV
Sbjct: 702 GGRNRV 707



 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 91  WRNSIHPEDLDYAEHSLARVLERGAVE-DREYRIITADGQIRWLSDKCYINQRVEPGEPL 149
           WRN +HP++L   E +  R L       + EYR+  ADG  RW+ +   + +R   G PL
Sbjct: 216 WRNMVHPDELPGLERARRRHLSGFTPRYEAEYRVQGADGAWRWIQETGQVVERDGDGLPL 275

Query: 150 IVVGMAEDITEKKQMELELHRL 171
            V G+  D++ +++ E +  RL
Sbjct: 276 RVAGIVCDVSVRRRAEEDRRRL 297



 Score = 44.7 bits (104), Expect = 7e-09
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 69  VSPAYERVFGRSAGLLLADHREWRNSIHPEDLDYAEHSLARVLERGAVEDREYRIITADG 128
           ++PA++ V G S   LL   R W   +HP+D       +  + ERG + + E R    DG
Sbjct: 317 LNPAWQEVLGWSREELL--DRPWAALVHPDDRASTMQDMDTLRERGVITNVENRYQCRDG 374

Query: 129 QIRWLSDKCYINQRVEPGEPLIVVGMAEDITEKKQMELEL 168
             RW+S     N    P + LI  G+  D+T  ++M  EL
Sbjct: 375 TWRWIS----WNSAFVPEQGLI-YGVGRDVTALRRMVEEL 409