Pairwise Alignments

Query, 549 a.a., AMP-binding protein from Pseudomonas simiae WCS417

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (415), Expect = 8e-45
 Identities = 140/526 (26%), Positives = 226/526 (42%), Gaps = 64/526 (12%)

Query: 66  LISKNCAHWIIADLAIWMAGHVSVPLYPNLTADSVAHVLTHSEAALVLIGKLDDWPAMAP 125
           ++S+NC  W  AD+    +  + VP+YP  T +  + ++  + A ++ +     + A+A 
Sbjct: 37  ILSQNCPQWTCADVGTLKSRAIVVPIYPTSTVEQASFIVNDAAAKVIFVDDAKQY-ALAC 95

Query: 126 GVPKDVPTISLPLCPSGEFDFSW-------------ADLQASSPIQDDPAPA-ASDLATI 171
            +    PT+   +        +               +   S+ ++     A   DL T+
Sbjct: 96  ELQTLCPTLEHVIVFDAAVQLAQDKPQHKHLDSLLALEYDQSAELEQRLKDANLDDLLTL 155

Query: 172 IYTSGTTGLPKGVMHSFGALGFAATRGTALFGLGEGDRLLSYLPLCHVAERMFVEMASIY 231
           IYTSGTTG PKGVM  +  +     +   +     GD  L++LPL HV ER +       
Sbjct: 156 IYTSGTTGDPKGVMLDYRNMASTVHQHDLILPFKTGDVSLAFLPLSHVFERGWSFYVLCR 215

Query: 232 TGQTVFFAESLETFLVDLRRARPTALFGVPRIWTKFQMGVYAKVP-----AKRLDA---- 282
            G+ V+  ++ +     +   RP  L  VPR   K    V  KV       K+L A    
Sbjct: 216 GGRNVYL-QNTQRVKEAISAVRPHTLCVVPRFLEKVYSAVQDKVAKSAEGRKKLFAWAMG 274

Query: 283 -------------------LLRLPFIGKRVGHKVLAGLGLDALRIALSGAAPVPEALLRW 323
                               L+     K V  K+ A LG   L+    G A +   +  +
Sbjct: 275 VGERQFEVSQGRVKGGLWLSLQWRLANKLVYSKLQAVLG-GRLKFMPCGGAALDLNVASF 333

Query: 324 YRRLGLDVLEVYGMTESCGYSHVCRPGQQTLGWIGLPCPGVEVRIDPAGEVQVRSGATML 383
           +  +G+ VL  YGMTE+           +  G  G   P +++++    E+ VR    M 
Sbjct: 334 FHAIGIPVLCGYGMTETNATVTCNTLDNRVAGSNGKVLPEIQIKLGKDDEILVRGDTVMR 393

Query: 384 GYYKDPQKTAETITADGFLRTGDKGEQDTEGRLRLTGRLKEIFKTSKGKYVAPAPIENRL 443
           GYY  P+ TA     DG+L+TGD G  D  G L +T R+KE+ KTS GKY+AP  +E  +
Sbjct: 394 GYYNRPEDTAAAF-EDGWLKTGDAGRLDAHGNLFITDRIKELMKTSNGKYIAPQRVEGTV 452

Query: 444 AEHARIEQVCVVGDGLSAPIGLCVLS-------------AVEQDPQALRSS-----LERW 485
                IEQV V+ D  +    L V +               E   + LR S      E+ 
Sbjct: 453 GRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKEKGLKYESPIELLRHSHVVEHFEQR 512

Query: 486 LVQVNQTLDKHERLRQLVVVKDSWAVENGFLTPTLKIKRNAIESTY 531
           L  + Q L   E++++  ++ +++++E G +TPTLK++R  I   Y
Sbjct: 513 LKHLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKMIYHKY 558