Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  225 bits (574), Expect = 2e-63
 Identities = 128/386 (33%), Positives = 207/386 (53%), Gaps = 6/386 (1%)

Query: 20  EPEHATYREQDGNGLYFRVKPNGQKSWELRYKKP-DGKWSWLGLGGYPEISGSLARQKAA 78
           +P+   YR  DG  LYF V+P+  +SW+ RYK+P   K ++L  G YP++S + AR+KA 
Sbjct: 14  KPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKAL 73

Query: 79  QLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGTSRRVLGALEL 138
           + R+  + G +P ++K+ +K       N TF+ +  +W   +    +  T       LEL
Sbjct: 74  EARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLEL 133

Query: 139 HVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVTGRAVHNPL 198
           + FP  G    +++     +  LR +E +G++E + R      EI + A  +G    NPL
Sbjct: 134 YAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHANPL 193

Query: 199 EGLSKFLQSRSAENYAHVSIEELPALLRAINS--YPHAKDVRIGLRLLSLLASRPSEIRE 256
            G+    +     +   +   E+  L+R + +    H     I  +L +++  RP+E   
Sbjct: 194 AGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV--RPNEASG 251

Query: 257 ARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLFPGRKDRTI 316
           ARW EID+  KLW IP ERMK  REHVVPL+ Q++  L  ++ ++G    +FP  ++  +
Sbjct: 252 ARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFPSSRNPKV 311

Query: 317 PRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA-KEGIAGVYN 375
           P  +     AL R+G+  R T HG R +AST LNEQGF+ + IEA L+H  K  I   YN
Sbjct: 312 PTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKNQIRKAYN 371

Query: 376 KAVYLPQRRVMMQWYADHLDELVEGN 401
           +  YL  RR +M W+++H+++   G+
Sbjct: 372 RTDYLDSRRKLMSWWSEHIEKSSYGS 397



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 13  DTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPE----- 67
           D  LA  E +  T  EQ+    +   +    K  +++ K  +G W  L L  +P+     
Sbjct: 84  DPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIP 143

Query: 68  ISGSLARQKAAQLREDASTGKNPLVSKQAR 97
           +S   A    A LR   S G    V + A+
Sbjct: 144 VSKLTAPMAIAALRPIESQGLLETVKRTAQ 173