Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  240 bits (612), Expect = 7e-68
 Identities = 133/394 (33%), Positives = 213/394 (54%), Gaps = 2/394 (0%)

Query: 11  LADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKP-DGKWSWLGLGGYPEIS 69
           L D  +   +P    Y   DG+GL  R+KPNG K W   Y +P +GK + L  G YP+IS
Sbjct: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67

Query: 70  GSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGTS 129
              AR+     +E  + G +P   ++ ++   +    +TFE + ++WF  ++       +
Sbjct: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127

Query: 130 RRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARV 189
             +  +LELH+FP    +    I   E +E L+ +E KG +E + R+     E+ + A  
Sbjct: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187

Query: 190 TGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLAS 249
            G    NPL G+    +    EN A ++  ELP L+ AI +    +  R  L       +
Sbjct: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247

Query: 250 RPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLFP 309
           RP+E   ARW EI+  +K+WTIPAERMK+RREH +PL+ Q +  L  ++ ++G    +FP
Sbjct: 248 RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP 307

Query: 310 GRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHAKEG 369
             +    P ++    MAL+R+G+AGR   HG R +AST LNEQGFD + +E+ L+H  + 
Sbjct: 308 SDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDN 367

Query: 370 -IAGVYNKAVYLPQRRVMMQWYADHLDELVEGNI 402
            +   YN+  YL +R+ MM W+++H++E   G++
Sbjct: 368 QVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL 401