Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  208 bits (530), Expect = 2e-58
 Identities = 122/387 (31%), Positives = 197/387 (50%), Gaps = 2/387 (0%)

Query: 10  PLADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKP-DGKWSWLGLGGYPEI 68
           PL +T +   +     Y   DG+GL  RVK NG K W L+Y  P   K + +  G +P++
Sbjct: 7   PLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDV 66

Query: 69  SGSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESGT 128
           S + AR++ ++ +   +   +P   K  + + ++    NTF      W   +R S +  T
Sbjct: 67  SLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPET 126

Query: 129 SRRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLAR 188
           + +   ALE H+ P  G     +I P   +  L  ++ +G +E + R+     E+  LA 
Sbjct: 127 ADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAV 186

Query: 189 VTGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLA 248
            +G    N L  ++K   +   ++   +  E LP L++AI +       R  L       
Sbjct: 187 ASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTM 246

Query: 249 SRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLF 308
           +RP E   ARW +ID   K+W IPAERMK +R H +PL+ Q++  L  ++ ++     +F
Sbjct: 247 TRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIF 306

Query: 309 PGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA-K 367
           P  K+     ++    MAL+R+GY G+   HG R +AST LNEQGF+ + IEA L+H  K
Sbjct: 307 PSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVDK 366

Query: 368 EGIAGVYNKAVYLPQRRVMMQWYADHL 394
             +   YN+A YL QRR +M W++ H+
Sbjct: 367 NEVRKAYNRAEYLEQRRKLMSWWSSHI 393