Pairwise Alignments

Query, 411 a.a., integrase from Pseudomonas simiae WCS417

Subject, 408 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  230 bits (586), Expect = 7e-65
 Identities = 134/398 (33%), Positives = 208/398 (52%), Gaps = 2/398 (0%)

Query: 9   RPLADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDG-KWSWLGLGGYPE 67
           +PL DT +   +P    Y   DGNGL  RV+P G K+W L Y +P   K + L LG YPE
Sbjct: 6   KPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTYPE 65

Query: 68  ISGSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWESG 127
           ++ + AR+KA   R+  +   +P   ++ ++ A      +TFE +  +WF+ ++T     
Sbjct: 66  LTLADARRKALDARKLIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTEITEN 125

Query: 128 TSRRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLA 187
            +     + +LHV P  G    ++I     +E  R +E KG +E + R+     E+   A
Sbjct: 126 HAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRLTQRLNEVMTYA 185

Query: 188 RVTGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLL 247
             TG    NPL G+    +    +  A ++  ELP LL  ++     +  R+ +      
Sbjct: 186 VNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIEWQLHT 245

Query: 248 ASRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLL 307
            +RP+E   ARW E +   +LWTIPAERMK +REHV+PLS   +  L EL++++G    L
Sbjct: 246 MTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISGHREYL 305

Query: 308 FPGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA- 366
           FP  ++     +      AL+R+G   R T HG R +AST LNEQGFD + +EA L+H  
Sbjct: 306 FPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAALAHTD 365

Query: 367 KEGIAGVYNKAVYLPQRRVMMQWYADHLDELVEGNIVQ 404
           K  +   YN+A YL +RR MM+W++  +       ++Q
Sbjct: 366 KNQVRSAYNRATYLERRREMMEWWSKSIKSAEANMLIQ 403