Pairwise Alignments

Query, 283 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 314 a.a., Substrate-binding region of ABC-type glycine betaine transport system from Pseudomonas syringae pv. syringae B728a

 Score =  105 bits (261), Expect = 2e-27
 Identities = 85/298 (28%), Positives = 145/298 (48%), Gaps = 23/298 (7%)

Query: 3   MRRLLGAAATLVVA---MSSTLASADS---KTLSIGYVDGWSDSVATTHVAAEVIKSKLG 56
           M RL+G +   + A   +SS + + D+   + + +G V+ W+D +AT+ +  +V+   LG
Sbjct: 1   MNRLIGCSVLALGASALLSSNVMAVDAASCQNVRMGVVN-WTDVIATSAMT-QVLLDGLG 58

Query: 57  YDVKLQAVATGIMWQGVATGKLDAMLSAWLPV---THGEYWAKNKDKVVDYGPNFKDAKI 113
           Y  K  + +  I++ G+   +LD  L  W P+   T   +    K KV+D  P+ +DA+ 
Sbjct: 59  YKTKQTSASQQIIFAGIRDQRLDLFLGYWNPLMTQTIAPFVEARKVKVLDK-PSLEDARA 117

Query: 114 GLIVPEYVKAKSIEDLKTDTTFKN----KIVGIDAGSGV--MLKTDEAIKQYGLD-YKLQ 166
            L VP Y+  K ++       F+     KI GI+ GSG    +K   A  Q+GL  ++L 
Sbjct: 118 TLAVPTYLADKGLKSFADIARFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLV 177

Query: 167 ASSGAAMIAELTRAEDKQESIAVTGWVPHWMFAKWKLRFL---DDPKGIYGAAETVNSIG 223
            SS A M+A + RA  ++E++   GW PH M     + +L   DD  G      TV ++ 
Sbjct: 178 ESSEAGMLAAVDRAVRRKEAVVFFGWTPHPMNVNVAMTYLNGSDDALGPNEGMATVWTVT 237

Query: 224 SKGLEKKAPEVAAFLKKFQWASKDEIGEVMLAIQEGAKPDAAAKDWVAKHPERVAEWV 281
           S    ++ P V   L    + + DE   +M  + +      +A+ W+  HP+  A W+
Sbjct: 238 SPTYAEQCPNVHKLLTNLTFTAADE-SRMMQPLLDHKDALESARQWLKDHPQDQARWL 294