Pairwise Alignments

Query, 1215 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  218 bits (555), Expect = 4e-60
 Identities = 162/540 (30%), Positives = 268/540 (49%), Gaps = 42/540 (7%)

Query: 559  SLAWNAYMRRQIQHRRMAERALNDQFEFMRALVNETPHPIYVRDRNGLLQTCNDSYLQVF 618
            S+ WN Y+   +  R+  E  L       +AL +     I   D  GL+  CN  + +  
Sbjct: 879  SIIWNGYVM-DVTERKSIEEELAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDM 937

Query: 619  DVKREDVIGKSALQISTALETEASQYHADYQRVVAQGNPLIVDRPLHIRGKKLTIYH--- 675
             + R+++       + +A + + ++         AQ   L+  +  H RG++  +     
Sbjct: 938  GLSRDELRSTPIFDVLSAQDKDVAK---------AQFKELVEGKIDHYRGERSFVRPSGE 988

Query: 676  --W----ILPYRDSTGEVQGIIGGWIDISERRQLFDELRAAKERADEANRAKSTFLATMS 729
              W    +    DS  + +  +   +D++E + L DEL  AK+ AD A++AK  FLA MS
Sbjct: 989  PLWMTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMS 1048

Query: 730  HEIRTPMNAVIGMLELTLKRADQGHLDRPA---IEVAYHSAKDLLELIGDILDIARIESG 786
            HEIRTPMNA+IGM +L L    Q  LD+     +E    +++ LL +I DILD ++IE+G
Sbjct: 1049 HEIRTPMNAIIGMSQLCL----QTQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAG 1104

Query: 787  RLSLSPERVNLKDVIESVVRVFDGLARQKTLSLLLEFKPGLDDTDVLIDPLRFKQVLSNL 846
            +L +      L  ++E +  +F   A QK + LL    P +    +L DPLR  QVL NL
Sbjct: 1105 KLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNV-PRHLLGDPLRLGQVLINL 1163

Query: 847  VSNAIKFTERGEVKVKVEVHATDLPQQVEMKLVVEDTGIGISREDQLRLFEPFSQADNSG 906
            ++NAIKFTERGEV + + +        V ++  V D+GIG+++E Q +LF+ F+QAD S 
Sbjct: 1164 MNNAIKFTERGEVLLSLSL-VEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTST 1222

Query: 907  HLARSGAGLGLVICRSLCAMMGGQLSLSSVPMVGTQVYVSLKM--HSLQPVHAVEEPKPA 964
                 G GLGL I + L  +MGG + + S    G+  + ++K+   S Q +   +E    
Sbjct: 1223 TRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSGQKLFVGQE---- 1278

Query: 965  TPTPAPVLNVLVVDDHPANRLLMCQQLGYLGHQFTAAQHGAAGFQAWRQEHFDLVIADCN 1024
                   +++LV DD+   R +M   L  +G      + G        Q+ + + + D  
Sbjct: 1279 ----LDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWK 1334

Query: 1025 MPIMNGYELSRSIREYEQREQLPPCVILGFTANAQPEEKRRCAEAGMNDCLFKPISLTIL 1084
            MP ++G E ++ I+  +Q +  P   IL  +A+A  +   +  + G+   + KPIS + L
Sbjct: 1335 MPNLDGIETAKQIK--QQTKNAPR--ILMVSAHANQDFLTQIEQLGLAGYISKPISASRL 1390



 Score = 89.7 bits (221), Expect = 2e-21
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 31/279 (11%)

Query: 963  PATPTPAPVLNVLVVDDHPANRLLMCQQLGYLGHQFTAAQHGAAGFQAWRQEHFDLVIAD 1022
            P    P     +L+V+D+  N  +  + L  +G   + A +G        Q+ FDLV+ D
Sbjct: 1415 PELLLPLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMD 1474

Query: 1023 CNMPIMNGYELSRSIREYEQREQLPPCVILGFTANAQPEEKRRCAEAGMNDCLFKPISLT 1082
            C MP+M+GY+ +++IR+  +  QLP   ++  TANA   +K  C  AGMND + KPI + 
Sbjct: 1475 CQMPVMDGYQATKAIRQRPELAQLP---VIAMTANAMAGDKEMCLRAGMNDHIAKPIEVN 1531

Query: 1083 ILERQLAQIGPHPTSTL---------------LDLSS---------LDALTGGD-PQLSR 1117
            +L + L +    P  +L               LD+ S         LD   G    Q S+
Sbjct: 1532 LLYQTLLKYLGAPVPSLENAEFVVNESLNPLNLDVESVVKWPEHPELDIDRGLQLVQNSK 1591

Query: 1118 RLLEELLSSSAHDRQEIIALVAR---QAPLQDIIEQAHKIKGAARIVQASVLAAQCEALE 1174
            RL + +    A  ++ ++  + +       +D +  AH +KG A  + +S LA     LE
Sbjct: 1592 RLYQRIFDRFATSQRNVVDQINKALASNKREDAVRMAHTLKGLAGNLSSSKLAELARQLE 1651

Query: 1175 QGCARGDELPLIETGIKTLEKCMLELERQLRMQLDSLTT 1213
               +   +  +    I+ L   + E   + + Q +  +T
Sbjct: 1652 LHLSENADYQVELDQIQILVASICEAIEKAKPQFEETST 1690