Pairwise Alignments

Query, 769 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (738), Expect = 7e-82
 Identities = 195/627 (31%), Positives = 313/627 (49%), Gaps = 46/627 (7%)

Query: 166 VRSLLLTGILLGLFYVMLTQPLVRIIRELSNRKQARLDCP-PGHEHDEIGVLVNVANQQF 224
           V  +LL+G+        +T+P+  +   +   ++  LD    G  H E+  L    N   
Sbjct: 183 VIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMA 242

Query: 225 ENMETEIQQRRHAEDRLTEYLGQLEDIVSARTLELKASNQRLSQSNDELEAAKMHALGMA 284
            +              L+EY  +++  +   T +L+ + ++L   N EL+ AK  A   A
Sbjct: 243 VS--------------LSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288

Query: 285 QARAAFLANMSHEIRTPLNGLLGMIALSLDSPLNAEQRQQLSIAHDSGKVLVELLNDILD 344
           + ++ FLANMSHE+RTPLNG++G     L + L   Q   L     S   L+ ++NDILD
Sbjct: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILD 348

Query: 345 LSKFDAGQLELERIPFDLGSLVEDTANLLSQNA-APSVELTCLIDPQFPAQVLGDPTRVR 403
            SK +AG+L LE IPF+   ++E+  NL + +A    +E+T  IDP+ P  V+GDP R++
Sbjct: 349 FSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQ 408

Query: 404 QIVSNLLSNALKFTRFGRVDVRLSAHEGQ-----VRIEVCDTGIGIAQEAQVKIFQPFTQ 458
           Q+++NL+ N++KFT  G +DV +     +     ++  V DTGIGI++  Q ++FQ F+Q
Sbjct: 409 QVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQ 468

Query: 459 AGAGITRQFGGTGLGLALTHNLCEAMKGRLSISSEVGFGSQFCADLPLPT---------- 508
           A A I+R++GGTGLGL +T  L   M G +S++S +  GS F   L L T          
Sbjct: 469 ADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYN 528

Query: 509 -------HLPAIQPAPLKGEVIAITSTGSGLTELLTTLLPHWGLTPRCYPRDEDLSGQTP 561
                  HL  I+P      ++  T   SGL     + +P           +   S +T 
Sbjct: 529 ADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLLNLAPSKETN 588

Query: 562 DLLITDCPECLFRLRPTITAPILVVTAYGNFMPSEEVAALAPLQQQARPLSRNALYQILQ 621
             L+    E   +    +T  ++V         ++++    P++  ++PLSR  L Q L 
Sbjct: 589 PTLV----ELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLA 644

Query: 622 RNLRSDAQLILDPIQMETAPLVHRARILLVEDNPVNQLVAKGMLSKLGCEVIVAAHGGEA 681
                 A   L   Q +  PL     ++ V+DNP N  +   +L +    V+    G EA
Sbjct: 645 AQQPQLANTSLPKPQADKLPLC----VMAVDDNPANLKLITALLQERVEYVVSCTSGQEA 700

Query: 682 LKFLEEQHFDLVLMDCNMPVMDGYEASRQIRRSGRWPDLPIVALTANALSEERERCRAAG 741
           ++  + + FD++LMD  MP MDG  A + I++   + D P++A+TA+A++ ER+R   AG
Sbjct: 701 IEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAG 760

Query: 742 MNDYLAKPFRREELSGLLELWVPKTTS 768
           M+DYL KP     L  +L  W P T S
Sbjct: 761 MDDYLTKPIEEHILQQVLVHWSPHTRS 787