Pairwise Alignments

Query, 322 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  199 bits (507), Expect = 5e-56
 Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 4/250 (1%)

Query: 9   TCCLSLAALCAAGSASALQLPLPPPGEDIVGQ-VQVIKAKYEDTFADLGTTYDLGYSEMV 67
           T  L L  +  + SA A + PLP P   +VG+ +     + + T  D+   + LG S ++
Sbjct: 6   TTALLLTLVFPSLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLGLSNLL 65

Query: 68  AANPGVDAWLPGAGTEIVLPTRFILPPGPREGIVINLAEYRLYYFPKGQNVVYTFPLGIG 127
            ANPGVD +LP  G+++++P + ILP  PREGIVIN+AE RLYY+PKG+  V   P+GIG
Sbjct: 66  EANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIG 125

Query: 128 REGWGSPIAH-TSIIAKTPNPTWTPPASIKAEHAANGDPLPNVVPAGPDNPLGPFKFTLG 186
           + G  +P    TS+  K  NPTWTP   I+ E+AA G+ LP V PAGPDNP+G +   +G
Sbjct: 126 QIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYIG 185

Query: 187 TPGYLIHGSNMKFGIGTRTSHGCFRMFNNNVLEMAGMVPVGTSVRIINDAYKFGRS-GGK 245
              Y IHG+N  FGIG R S GC R+ ++++  +   VP+GT V+ +N   K      GK
Sbjct: 186 NL-YAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGK 244

Query: 246 VYLEAHTPLN 255
            YL  H PL+
Sbjct: 245 RYLAVHQPLS 254