Pairwise Alignments

Query, 1572 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1465 a.a., Rhs-family protein from Pseudomonas fluorescens FW300-N2E2

 Score =  462 bits (1190), Expect = e-134
 Identities = 342/1103 (31%), Positives = 516/1103 (46%), Gaps = 123/1103 (11%)

Query: 408  ARNPAGNVAASSDKTATNGCPVSMVTGEELLTLT---DGTLDGLLPFEWSRLYRTSAVET 464
            A + A N AA++   ++N  PV   TG ++L      D  L G+LP +W R+Y +     
Sbjct: 280  AASSAANAAANAAMGSSN--PVHAATGAKVLGADEDLDFVLPGILPIDWQRVYNSHDERR 337

Query: 465  DCGLGFGWSHSLAHRLSVS-----GDAVVWTDHENRSTTLPLPTASRP--AITNSLAEAA 517
            D   G GWS +   ++ +      G+ +++TD + R    P+   S P      S  E  
Sbjct: 338  DSLFGAGWSVAYEVQVQIQPHPEGGETLIYTDEQGR----PIDMGSIPLGGAVFSAGEGL 393

Query: 518  IYLGAVPDELVLSQGSRFYHFRDGA--------LTAISDAYDNRLRICRDFLGRIERLDN 569
                 V  +L++      Y   + +        L+ + D  DNR+ +  D  GR+ RL +
Sbjct: 394  AVRRHVNGQLLIESEDGLYRLFEPSPANPSHLRLSQLGDRNDNRIHLDYDDAGRLVRLRD 453

Query: 570  GVGR-SLFLRYASSRIVAVDYQIERAVDDGPFVWVTEQTVVAYAYDDSGRLISATNAVGE 628
                  + L  A  R+      IER   D      + + +V+YAYD +  L    +A G+
Sbjct: 454  TFDLVHVELIRAGERVT----HIERLYPDQ-----SREVLVSYAYDAANTLAEVRDATGQ 504

Query: 629  SEV-YRYDDQHVILERGLAGGASFFWAWERAGKAA-RCVRHWA----------------- 669
             +  +RYD +  ++E  L  G   F+ W        R VRHW                  
Sbjct: 505  VQRRFRYDAEQRMVEHQLPSGLHCFYEWALIDDQEWRVVRHWTDEGDAYQFDYDLKAGIT 564

Query: 670  ----SFSQMDTRYAWDDNGQVTVF-NAAGSQEVYVHDLRARLGQRVDPDGAQHFKSYDDP 724
                S  ++ TR+ W+   Q+T + +  G   ++  +   ++    DP G Q+  +YDD 
Sbjct: 565  RISDSLQRVSTRH-WNSQHQITQYTDNLGQTWLFEWNDERQMLSATDPQGGQYQFNYDDA 623

Query: 725  GRLTVEQAPLGAITAYPYDEAGRLVALFPGDDAPTTYEHDNGFVRVVRRGQAVWKYERNN 784
            G L  E  PLG   +  + E   L                   V     G + WKY  + 
Sbjct: 624  GNLIGETDPLGRSESTLWLEHWALP-----------------LVDTNAAGHS-WKYRYDQ 665

Query: 785  QGDVTRKTDPDGNATDYSYNKYGQLVGVWYPDHSCHRLTWNERGQLLEEQLPNGVIKRYC 844
            +G+ T + DP G+ T Y Y+ +GQ+V +        +L WN  GQL+E    +G   R+ 
Sbjct: 666  RGNCTTEIDPLGHVTRYRYDAHGQVVEIIDATGKNKKLRWNPFGQLVEHVDCSGYPTRFS 725

Query: 845  YDDLGRQVAREDAQGALTQYQWDSVGRLIRVVLPGGATREYSYNAYGKITSERNELGHVT 904
            YD  G      DA G  TQ+ +D+ GRL+   LP G T  Y  +  G +    +  GH T
Sbjct: 726  YDARGYLHTITDALGERTQFSYDAQGRLLGNQLPDGRTEHYQRDTAGLLIGYTDPAGHTT 785

Query: 905  RYEYADGLHLISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHSNGLTQQEIGF 964
             Y++ +    + +R +A G QV++ YD+   L   + NE GE+YR  + +     ++   
Sbjct: 786  LYQH-NRRGQVRQRTDAQGRQVQFTYDSFGRLQA-LTNENGESYRFAWDAGDRLTEQQDL 843

Query: 965  DGQRSAYAYDLNGNLQEKTE----HGDD--------GSQLVTRYERDHAGRLVRKTLPDG 1012
            DG    Y YD   N+   T     +G           + +V R ERD  GRL+ K   DG
Sbjct: 844  DGSAKRYDYDRLDNVAAVTAMPAPYGTGLALIPETPPAPIVHRLERDAVGRLIAKVTDDG 903

Query: 1013 SLVDYAYDRQGNLLSV-----ENGHWALAYEYDSQNRLTAEHQGWGTLRYGYDACDNLQT 1067
               +Y+YD    L +V     +     L++ YD+  +L AE+   G+L++ YD   NL  
Sbjct: 904  R-TEYSYDPLDQLTAVTFTDLQGNAQTLSFAYDALGQLLAENSTAGSLQHHYDELGNLIQ 962

Query: 1068 LRLPDNNRVTFNHAKGGLLEKVEVNGQTLTAHLFDTGREHQ---RGQGKLLSSYQYDAQG 1124
             +LPD   V   +   G L ++ ++G+ ++   F+  R H+   R QG++ +  +YD  G
Sbjct: 963  SQLPDGRWVNRLYYGSGHLHQINLDGKVISD--FERDRLHREVLRTQGQISTRSEYDRSG 1020

Query: 1125 RLFNH-----GLCNVEGAIYQRQYHYDTCGNLTRRLDTRKGEHH---YHYDALSRLIRAD 1176
            RL        G  ++  A  Q+ + YD   NL  +LD +         HYDA  R+I + 
Sbjct: 1021 RLRTRQRRHSGQPSLLPAAVQKHFEYDPADNLIGKLDQQPAAQQRQLLHYDATGRIIASQ 1080

Query: 1177 HS-QGEQERFAHDPAGNLLMQNRPGPDIVAGNRLMIQGDHHYDYDAFGNLIRERRGKGHT 1235
             S  G++E F +D A NLL    PG  +V  N+L+   D  Y YDAFG +I +R  K   
Sbjct: 1081 DSLHGQRETFTYDAAANLLDGPAPGAGLVVHNKLLTYQDKRYRYDAFGRMIEKRSAKRG- 1139

Query: 1236 LVTEYRYDCQHRLIGIKKPNGQTASYRYDPFGRRISKTVDGI------TTEFFWQGDTLI 1289
             V  + YD + RLI ++  +G   +  YDP GRRI+KT           T F W G  L+
Sbjct: 1140 -VQHFAYDAESRLIEVRNDDGSVVNMAYDPLGRRIAKTEHDNHGYPLGETRFTWDGLRLL 1198

Query: 1290 AEHHANRHRSYLYEPDTFRPLALLEGFGPKETKAYHYQLDHLGTPQELTNPDGEIVWSAH 1349
             EH   +   YLYE D + PLA ++G GP + K  +Y  D  G P++LT  DG  VW A 
Sbjct: 1199 QEHRHQQTSLYLYEDDGYEPLARVDGSGPLQ-KIRYYHNDLNGLPEQLTEADGHNVWQAT 1257

Query: 1350 YRAYG---EITRVDIGKVDNPLRFQGQYFDQESGLHYNRHRYYNPDIGRYLTPDPVKLAG 1406
            YR +G   E  R      +  LRFQGQY D+E+GLH+N  R+Y+PD+GR+ TPDP+ LAG
Sbjct: 1258 YRVWGNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDVGRFTTPDPIGLAG 1317

Query: 1407 GINTYQYVPNPTGWIDPLGLSNC 1429
            G N YQY PNP GWIDP G + C
Sbjct: 1318 GANLYQYAPNPLGWIDPWGWAPC 1340