Pairwise Alignments

Query, 664 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 621 a.a., polysaccharide biosynthesis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  521 bits (1341), Expect = e-152
 Identities = 301/644 (46%), Positives = 411/644 (63%), Gaps = 33/644 (5%)

Query: 8   LVGLPRRQKRFLQVATDIVLVWAALWLAFVVRLGFDDLNNPFVVHLWLFLSAPV-IAIPL 66
           L+   R  KR + +  D+  +  +L+ A  +RL  D L   F    +L +   V + +  
Sbjct: 8   LLSAQRHHKRMITLLYDVFALMFSLYAAIALRL--DTLAFTFSFPEFLSMMTTVGVTLYC 65

Query: 67  FIHFGMYRAVMRYFGNDALIAIIKAVSLSALLLALVVYLYSNHQTVVPRSIVFNYWWLSM 126
           F+  GMYRAV+RY    A+  I  +V +SA+ LAL  + +   Q  +PRS+ F Y  L+ 
Sbjct: 66  FVRLGMYRAVLRYMMLPAIGYIFLSVIISAVTLALSGFFF---QAFIPRSVPFIYAGLAT 122

Query: 127 VIIGGLRLAMRQYFQGDWFTAAQHVPFTSRDDGLIKVAIYGAGAAGNQLVAALRMGRVMR 186
           + +GG R+ +R  +   +    +  P          V IYGAG+ G  L  AL  G    
Sbjct: 123 LTLGGPRIFIRTIY---YHYYKRQKP---------NVFIYGAGSTGRDLAYALIQGDEYH 170

Query: 187 PVAFIDDDSGISDRIISGLQVYKPKRIQQMIDETGAEELLLAIPSSTRARRREILGYLEG 246
           PV F+DDD   + +II GL+V+     + + +     ++L+AI +  +  R ++L  L  
Sbjct: 171 PVIFLDDDPAKTGQIIFGLRVHHSSDFESLRNLYEPVKMLIAINNIGKNTRIKLLERLSH 230

Query: 247 YPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDPVPAQPELLERCIKHRVVMVSGAG 306
           +P+ ++SVP   D+A+GR K  D+Q++DIADLLGR PV     LL++ I  + VMV+GAG
Sbjct: 231 WPIEIQSVPSVEDIAAGRAKATDVQDLDIADLLGRAPVEPDLALLQKNITEKSVMVTGAG 290

Query: 307 GSIGSELCRQILTLEPTSLLLFDHSEYNLYCILSELEQRVQSESLNVTLLPILGSVRHQD 366
           GSIGSELCRQIL  +P +L+LF+ +EYNLY I  EL+   Q+  LN  ++  LGSV+ ++
Sbjct: 291 GSIGSELCRQILAQKPKTLVLFELNEYNLYTIDQELQAIKQNLKLNTKIVAALGSVQREN 350

Query: 367 KLLEVMNTWSVDTVYHAAAYKHVPMVEHNIAEGILNNVIGTLNTAQAALQAGVENFVLIS 426
           ++ ++M    V+TVYHAAAYKHVP+VE N+ EGI NNV GTL  A AA++AGV+NF LIS
Sbjct: 351 RVKKLMQAHQVETVYHAAAYKHVPLVEDNVIEGIRNNVFGTLACANAAIEAGVKNFTLIS 410

Query: 427 TDKAVRPTNVMGSTKRLAELVLQALSKEVAPTLFGDASNISRVNKTRFTMVRFGNVLGSS 486
           TDKAVRPTN+MG++KR+AELVLQAL+ + + T+              FTMVRFGNVLGSS
Sbjct: 411 TDKAVRPTNIMGASKRMAELVLQALADKNSTTI--------------FTMVRFGNVLGSS 456

Query: 487 GSVIPLFHKQIQAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGEPVK 546
           GSV+PLF KQI+AGGP+TVTHP I RYFM IPEAAQLVIQAG+M   G VFVLDMGEPVK
Sbjct: 457 GSVVPLFKKQIRAGGPVTVTHPDIIRYFMLIPEAAQLVIQAGAMSHNGQVFVLDMGEPVK 516

Query: 547 IVELAEKMIHLSGLSIRSD-TNPHGDILINFSGLRPGEKLYEELLIGDNVAATRHPMIMR 605
           IV+LA++MIHL G+    D  +  GDI I F+GLRPGEKLYEELLIG+NV  T H  IM 
Sbjct: 517 IVDLAKRMIHLMGMKEFCDGRSDEGDIEIKFTGLRPGEKLYEELLIGENVEGTSHQKIMT 576

Query: 606 ANEELLGWEVLKARLHGLLTAVEAGDFALVRQLLKNTVSGYSPE 649
           A EE L W+ ++  L  L       D   ++++L +  +GYSP+
Sbjct: 577 ACEEKLSWDAMEDLLTELDVCCHNFDVECIKRILLDAPTGYSPQ 620