Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 81.6 bits (200), Expect = 7e-21
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 10  DEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQ 69
           ++ L+ +   GD  AF AL   H+  ++ F+  L    + A ++ QET++   ++  + +
Sbjct: 5   EQELIQQAVRGDRQAFGALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQALPRWR 64

Query: 70  GRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQAR 129
             A  +TWL QIARN  +D  R+   H  L  + DEQ     D +  P ++L  +RD   
Sbjct: 65  PEARLQTWLLQIARNAALDLLRQRQRHVVL--AADEQAE-PIDPAPSPLRRLQSARDLEM 121

Query: 130 LDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKL 180
           L+  L  LP +QRE+ LLR    L   ++AA       TVKSRL  A++ L
Sbjct: 122 LERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172