Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score = 75.1 bits (183), Expect = 7e-19
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 5/180 (2%)

Query: 10  DEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQ 69
           D+ L+ R + GD  AF+ L  +++  +   +V   + +  A+++ QE ++   R+    +
Sbjct: 7   DQQLVERVQRGDKRAFDLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYRALANFR 66

Query: 70  GRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSA-----GPEQQLSLS 124
           G ++F TWL++IA N   +H    G   P  D   E       D A      PE+ L   
Sbjct: 67  GDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVSSEDAEFYEGDHALKDIESPERSLLRD 126

Query: 125 RDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184
             +  +   +Q LPED R    LR    L    IA++   P+ TV+SR+  A++ + + L
Sbjct: 127 EIEDTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186