Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Azospirillum brasilense Sp245

 Score = 79.7 bits (195), Expect = 3e-20
 Identities = 65/182 (35%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 6   DSPSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSA 65
           D   +E L A  R  D  AF AL+      L  +L      A  AEE+ Q+  L + R A
Sbjct: 12  DRTFEELLTAVGRDRDRTAFAALFGHFAPRLKAYLRRQGCDAGGAEELVQDVMLLVWRRA 71

Query: 66  -TQPQGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLS 124
            T    +AS  TW+F IARNR ID  R+     P  D  D  L     +SA  +  ++  
Sbjct: 72  ETYDPTQASAATWVFTIARNRRIDALRRE--QRPEIDPADPTLVPDPMESA--DDGVAAR 127

Query: 125 RDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184
               RL AAL+ LP +Q ++  L    D     I+A  G PL TVKSRLR A ++LR+ +
Sbjct: 128 ETAGRLRAALRTLPPEQADLLRLAYFEDKPHSLISAEQGIPLGTVKSRLRLAMERLRKAM 187

Query: 185 AE 186
            +
Sbjct: 188 RD 189