Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 176 a.a., RNA polymerase sigma-70 factor from Xanthomonas campestris pv. campestris strain 8004

 Score = 99.8 bits (247), Expect = 3e-26
 Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 6/157 (3%)

Query: 28  LYARHRQGLYRFLVSL--SNKAELAEEIYQETWLSLI-RSATQPQGRASFRTWLFQIARN 84
           L+ RH + L+ FL  L   N +E AE++ Q+TW+ L+ R +    G+A+F T+LFQI RN
Sbjct: 16  LFQRHNRALFNFLAWLCEGNLSE-AEDLAQKTWVKLMTRCSDYRPGQAAFTTFLFQIGRN 74

Query: 85  RLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQARLDAALQGLPEDQREV 144
             ID   +   H+    + DE      D     EQ   L + Q R+ AA+  LP+ QREV
Sbjct: 75  AWID--TRRSAHHTTSTALDEAHLQLPDQELSGEQLAMLGQQQHRVRAAVMALPDAQREV 132

Query: 145 FLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLR 181
            +LR   +L V +IA + G   ETVKSRLRYA  KLR
Sbjct: 133 VVLRFFAELGVEEIAHVVGEGFETVKSRLRYAFAKLR 169