Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 218 a.a., RNA polymerase sigma factor RpoE from Synechococcus elongatus PCC 7942

 Score = 80.1 bits (196), Expect = 3e-20
 Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 5   DDSPSDEALL-ARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIR 63
           D  P DE +L  + +  D  AF  L  R++  + R +  L+   E   ++ QE W+ + R
Sbjct: 24  DQLPLDELVLRCQKQPSDRLAFTELVRRYQNHVERLIYHLAPDWEDRADLVQEVWIRVYR 83

Query: 64  SATQPQGRASFRTWLFQIARNRLIDHWRKHGIHNPL----------HDSYDEQLHAQADD 113
           +    Q   SF+ WL +I  N   D  R+     P           +D  D +L  +   
Sbjct: 84  NLKNLQEPRSFKGWLSRIVTNLFYDELRRRKRRQPALSLDAPRLIGNDQLDWELPTE--- 140

Query: 114 SAGPEQQLSLSRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRL 173
            AGP+++L        L  A+ GLPE  R   +LR    L   +IAA TG  L TVKSR+
Sbjct: 141 QAGPDEELEKQEFYNELRRAIAGLPESFRTTIVLREIEGLAYEEIAAATGVSLGTVKSRI 200

Query: 174 RYAQQKLRRLLA 185
             A+Q+L+  L+
Sbjct: 201 ARARQRLQDQLS 212