Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 198 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  112 bits (279), Expect = 6e-30
 Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 6/181 (3%)

Query: 10  DEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQ 69
           DE L+ RY +GD  AF+ LY RH+ GLYR+ +     ++LAE++YQETW  +I++A   +
Sbjct: 15  DELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQETWGRVIKAAPAYE 74

Query: 70  GRASFRTWLFQIARNRLIDHWRKHGIHNPLH--DSYDEQLHAQADDSAGPEQQLSLSRDQ 127
             A F TWL++IA N LIDH R      PL+  D+ DE+  A   DS  P +        
Sbjct: 75  ISAKFTTWLYRIAHNLLIDHVR---AVKPLNEADTLDEEGMA-LTDSMTPVRSHEHDLKV 130

Query: 128 ARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLLAEE 187
             L   +  LP+ Q+E FLL          I+ +    LE  KSR+RYA Q L+  +A+ 
Sbjct: 131 QALKHCVGLLPQVQKEAFLLSSEMGFTALMISEIASVSLEATKSRIRYAYQSLKTCVAKR 190

Query: 188 I 188
           +
Sbjct: 191 L 191