Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 193 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 92.8 bits (229), Expect = 3e-24
 Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 13/186 (6%)

Query: 4   PDDSPSDEALLARYRTGDSAAFEALYARHRQ---GLYRFLVSLSNKAELAEEIYQETWLS 60
           P+DS +DE L+A  R  D  AF  L  RH     G+ R +V  +   ++A++++ + W +
Sbjct: 14  PEDS-ADEELMALVRDNDREAFRTLVTRHIDRVVGVARRVVGPTEAEDIAQDVFLKLWTN 72

Query: 61  LIRSATQPQGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQ 120
             R   QP G  SFRTWL+++  NR IDH RK     P+ D+ +       DD+ GP + 
Sbjct: 73  --RDQWQP-GAGSFRTWLYRVVTNRCIDHTRKRTAI-PIDDAPEIP-----DDARGPLEN 123

Query: 121 LSLSRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKL 180
              S    R+  AL+ L E QR    L  + DL   ++A +    L  V+S L+  + KL
Sbjct: 124 CHASETADRVRQALRFLSEPQRMAITLYYNEDLTAAEVATVMDLSLNAVESLLKRGRHKL 183

Query: 181 RRLLAE 186
           R LLAE
Sbjct: 184 RELLAE 189