Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 206 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 89.0 bits (219), Expect = 5e-23
 Identities = 67/187 (35%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 5   DDSPSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRS 64
           D +     ++A  R+GD AAF  L+  +   L  +L  L      AEE+ QE  L + R 
Sbjct: 25  DGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALLMVWRK 84

Query: 65  ATQ-PQGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSL 123
           A +    +A   TW+F IARN  ID  RK     P  D  D  L   + D+A     + +
Sbjct: 85  AERFDPTKAGAATWIFTIARNLRIDMLRKE--RRPEIDPEDPLLEPSSPDAA----DILI 138

Query: 124 SRDQ--ARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLR 181
            +DQ   R+  AL+ LP DQ EV  L    DL   ++A   G PL TVKSRLR A  K+R
Sbjct: 139 EKDQRETRVRTALRSLPADQAEVVRLAFFEDLTHVEVADRLGLPLGTVKSRLRLAFSKVR 198

Query: 182 RLLAEEI 188
             + +E+
Sbjct: 199 GSVGDEV 205