Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 203 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 99.0 bits (245), Expect = 5e-26
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 6/177 (3%)

Query: 9   SDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQP 68
           SDE LLA    GD  A   LYARH   +YRF++ +   A  AE++  + +L + R+A Q 
Sbjct: 22  SDEMLLASIANGDRTAMHTLYARHNVRVYRFILRMVRDAATAEDLVSQVFLDVWRTARQF 81

Query: 69  QGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYD-EQLHAQADDSAGPEQQLSLSRDQ 127
           +GRA   TWL  IAR + +   R+       H+  D + +   AD S  PE  L  SR  
Sbjct: 82  EGRAQVSTWLLSIARFKALTALRQR-----QHEDIDQDDVLEIADGSDSPETALDRSRTS 136

Query: 128 ARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184
             L A +  L    RE+  L  + +  V ++  + G P  TVK+R+ YA+++L  LL
Sbjct: 137 DILRACIAKLSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKTRMFYARKQLAELL 193