Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 73.9 bits (180), Expect = 2e-18
 Identities = 67/195 (34%), Positives = 92/195 (47%), Gaps = 19/195 (9%)

Query: 4   PDDSPS----------DEALLARYRTGDSAAFEALYARH-RQGLYRFLVSLSNKAELAEE 52
           P DSP+          D ALL R+  GD  A   L AR   + L   L  L N+AE AE+
Sbjct: 20  PPDSPATPMAEGVDDPDGALLIRFAAGDPEAAAVLTARLVPRALGVALRVLGNRAE-AED 78

Query: 53  IYQETWLSLIRSATQPQ-GRASFRTWLFQIARNRLIDHWRK-HGIHNPLHDSYDEQLHAQ 110
           I QE  + L R A   + GRA   TWL+++  N  IDH R+  G H  L     + +   
Sbjct: 79  ITQEAMVRLWRQAEHWEPGRARLSTWLYRVVMNLCIDHKRRLRGGHVDL-----DAIPDP 133

Query: 111 ADDSAGPEQQLSLSRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVK 170
            D +    +Q+     Q  L  AL  LPE QR+  +LR   DL  P+IA +    +E V+
Sbjct: 134 PDPAKSAAEQMQDGARQDALQDALMQLPERQRQAVVLRHIEDLANPEIAGIMDISVEAVE 193

Query: 171 SRLRYAQQKLRRLLA 185
           S     ++ L  +LA
Sbjct: 194 SLTARGKRALAAILA 208