Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 189 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 83.2 bits (204), Expect = 3e-21
 Identities = 65/187 (34%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 1   MAVPDDSPSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLS 60
           M  P D      +LA     D+AAF  L+      +  FL+       LAE+  Q+   +
Sbjct: 9   MERPLDMEWVSVMLAIRDRQDTAAFARLFRHFAPRIKAFLIKSGASDTLAEDCAQDVMTT 68

Query: 61  LIRSATQ-PQGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQ 119
           + + A      RAS  TW+F IARNR ID  RK     P      E+L    +       
Sbjct: 69  VWQKAHMFDPSRASVATWIFTIARNRRIDMLRKERRPEP------EELPWGPEPEPDQAD 122

Query: 120 QLSLSRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQK 179
            L L ++  +L AAL  LPE QR +      GD+   +IA  TG PL T+KSRLR A  K
Sbjct: 123 VLMLQQESEKLQAALIQLPEKQRILVERCYFGDMSHSEIATQTGLPLGTIKSRLRLALDK 182

Query: 180 LRRLLAE 186
           LR  L +
Sbjct: 183 LRHELKQ 189