Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Cupriavidus basilensis FW507-4G11

 Score = 76.6 bits (187), Expect = 3e-19
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 9   SDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQP 68
           +D+ L+ R + GD  AFE L  ++ + + R +  L   +   E++ Q+ ++   R+  Q 
Sbjct: 6   ADQLLVERVQQGDKRAFELLVVKYHRKIIRLISRLVRDSAEVEDVAQDAFIKAYRALPQF 65

Query: 69  QGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYD-EQLHAQAD-----DSAGPEQQLS 122
           +G ++F TWL++IA N   ++    G         D E+    AD     D   PE  L 
Sbjct: 66  RGESAFYTWLYRIAVNTAKNYLATQGRRPEASSDIDAEEAETFADGEQLRDINTPESMLH 125

Query: 123 LSRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQ---- 178
             +    ++ A++ LPE+ R    LR    L   +IA   G P+ TV+SR+  A++    
Sbjct: 126 TRQVAETVNRAMEALPEELRTAITLREIEGLSYEEIAEAMGCPIGTVRSRIFRAREAIAD 185

Query: 179 KLRRLL 184
           KLR LL
Sbjct: 186 KLRPLL 191