Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 186 a.a., RNA polymerase sigma factor from Cupriavidus basilensis FW507-4G11

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 6   DSPSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSA 65
           D+  D+ALLAR    D+AA   + AR    +      +   +  A+++ QE ++ L + A
Sbjct: 3   DTDPDDALLARIGRHDAAAVREMVARKLPRVLALATRMLGDSGEAQDVAQEVFMRLWKHA 62

Query: 66  TQPQ-GRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLS 124
            + Q GRA F TWL ++A N   D  R         +   E +  QA   AGPE+ L  +
Sbjct: 63  ARWQPGRARFDTWLHRVALNLCYDRLRG------AREQAMEPVPEQAAPGAGPEEALDAA 116

Query: 125 RDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184
              AR+ AAL  LP  QRE  +L+ + +L   + AAL G  +E ++S L  A++ LR LL
Sbjct: 117 AQGARVGAALAKLPARQREALVLQYYQELPNGEAAALMGISIEALESLLARARRNLRDLL 176

Query: 185 AEE 187
            ++
Sbjct: 177 MQD 179