Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 205 a.a., RNA polymerase sigma factor from Caulobacter crescentus NA1000

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 12  ALLARY-RTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQ-PQ 69
           AL+ R  ++ D AAF  L+A +   +   LV   +    AEE+ QE  L++ R A     
Sbjct: 28  ALITRIAQSQDRAAFAELFAHYAPRVKTLLVRSGSTPSAAEELAQEVMLAVWRKAHYFDP 87

Query: 70  GRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQAR 129
            RAS   W+F IARN  ID  R+          Y   L+  A++   P+  LS  +D   
Sbjct: 88  KRASAAAWIFTIARNLRIDSLRRGS-----SALYAVDLNLGAEEPPQPDAILSGMQDAQI 142

Query: 130 LDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLLAEE 187
           + +A+Q L  DQ +   +    +    QI+   G PL TVK+R+R+   KLR  +  E
Sbjct: 143 VRSAMQTLNPDQSQAIEMAFFQEQTHSQISEALGVPLGTVKARIRFGMMKLRAFIERE 200