Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score =  112 bits (281), Expect = 3e-30
 Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 1/174 (0%)

Query: 9   SDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQP 68
           +DE L+ RY  GD  AFE LY +H+  LYR+ V      +LAE++YQETW  +IR+A   
Sbjct: 14  TDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANY 73

Query: 69  QGRASFRTWLFQIARNRLIDHWRK-HGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQ 127
           +  A F TWL++IA N LIDH R    +    HD+ +        +   P+     ++  
Sbjct: 74  EPSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKS 133

Query: 128 ARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLR 181
             L   +  LP+ Q+E F+L +        I+ + G  LE  KSR+RYA Q L+
Sbjct: 134 LLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLK 187