Pairwise Alignments

Query, 504 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 541 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2E3

 Score =  171 bits (432), Expect = 8e-47
 Identities = 143/533 (26%), Positives = 242/533 (45%), Gaps = 53/533 (9%)

Query: 6   LKLLAAATLTAWSLTAGLAQAAGVLTIGCREDSTTFDPIKSAQNRDTWVFAN-VYDTLVR 64
           +  L  A+L A   +A  AQAA  L          FDP +     D    A  +++ L +
Sbjct: 7   IPFLVGASLLA---SAPFAQAATNLVFCSEGSPAGFDPGQYTTGTDFDASAETMFNRLSQ 63

Query: 65  VDNLGTKMEPGLAESWDISKDGLTYTFKLRDAK-------FSDGSAITADDAAFSLLRIR 117
            +  GT + PGLA SWDIS DGLTYTF LRD         F+      ADD  F+  R+ 
Sbjct: 64  FERGGTAVVPGLATSWDISPDGLTYTFHLRDGVKFHTTPYFTPTRNFNADDVLFTFNRMI 123

Query: 118 DNKASLWADPF------------------NLINTAKASDPKTLVVTLKTPAVAFLSQLAS 159
           +       DPF                  N+    K  D  T+  TLK    AF+  +A 
Sbjct: 124 NKD-----DPFRKAYPTEFPYFTDMGMDTNITKIDKVDD-HTVKFTLKEVDAAFIQNMAM 177

Query: 160 PTVSILSEK---AMTKMGEDA-YSENPVTSGAFTVDEWRKGDRVILKKNPNFWQAKNVSL 215
              SI S +    + K G+ A  ++ PV +G F    ++K   +    N ++W+  +V +
Sbjct: 178 SFASIQSAEYAAQLLKEGKAADINQKPVGTGPFVFKSYQKDSNIRYTGNKDYWKPDDVKI 237

Query: 216 DGVEWVSVTDDNTRMRMVQNNELDTAIFVPFSRVEELKKDKNVVIHADPSTREDHLLIN- 274
           D + +   TD + R++ ++ NE    +F   + ++ LK+DK + +         ++  N 
Sbjct: 238 DNLIFAITTDPSVRIQKLKKNECQITLFPRPADLKALKEDKTLKVPDQAGFNLGYIAYNV 297

Query: 275 -------HEHGLLAKPEVRQALDMAIDKQSLVKTATYGQGTVAYSYIPKGSLYHYANNLQ 327
                   +   +A+ +VRQALDMA++KQ ++ +   G G +A + +P     +      
Sbjct: 298 MDKIKGSDQPNPMAQLKVRQALDMAVNKQQIIDSVYQGAGQLAVNAMPPTQWSYDTTIKD 357

Query: 328 RPYDPTAAKKLLEQAGAKD-LKLNY----VVNAGNEADEQIAVIIKDQLAKVGVTANLQK 382
            PY+P  AK+LL++AG K+  ++N     V    N   + +A +++   AK+G+ A +  
Sbjct: 358 APYNPEKAKQLLKEAGIKEGTEINLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVT 417

Query: 383 VDPTQSWQMLVDGEYDISVMYWTNDILDPDQKTTFVLGHDTNQ-NYMTRYKNDKVKALVA 441
            +  +  +    GE    ++ W+ D  DPD     + G D+ Q N  +++ + K   +V 
Sbjct: 418 YEWGEYIKRSKGGENGAMLIGWSGDNGDPDNWLNVLFGCDSLQGNNFSKWCDKKFDGIVK 477

Query: 442 QARIEADPVKREQMYVELQKLAKQDVNWIDLYYSPYINISRKNVSNFLQNPLG 494
           +A+   D  KR ++Y + Q + K  V    + +S      R NV +F  +P G
Sbjct: 478 EAKRTTDQAKRTELYKQAQHVLKDAVPMTPIAHSTVFQPMRDNVQDFKISPFG 530