Pairwise Alignments

Query, 504 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 524 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  200 bits (508), Expect = 1e-55
 Identities = 158/518 (30%), Positives = 235/518 (45%), Gaps = 44/518 (8%)

Query: 16  AWSLTAGLAQAAGVLTIGCREDSTTFDPIKSAQNRDTWVFANVYDTLVRVDNLGTKMEPG 75
           +W         A  L IG   +  + DP  +    D+ +  NVYD LVR       +EP 
Sbjct: 20  SWQAQVQARTPADALLIGQVAEPQSLDPQVATAANDSRILVNVYDGLVRNGEGKLDIEPA 79

Query: 76  LAESWDISKDGLTYTFKLRD-AKFSDGSAITADDAAFSLLRIRDNKASLWADP------- 127
           LA  W IS DGLTY F LR+  KF DG+   AD   F+  R+ D+K + W D        
Sbjct: 80  LATRWTISPDGLTYRFYLREGVKFQDGTPFNADAVKFTFDRMLDDK-NPWHDTGPFPLSF 138

Query: 128 -FNLINTAKASDPKTLVVTLKTPAVAFLSQLASPTVSILSEKAMTKMGEDAYSENPVTSG 186
            F+ I   +  D  TLV  LK P   FLS LA+PT  I+S  A+ K G++ +  +PV +G
Sbjct: 139 FFSSIKNIETPDQNTLVFRLKEPFSPFLSNLATPTGLIVSPAAVKKYGKE-FGRHPVGTG 197

Query: 187 AFTVDEWRKGDRVILKKNPNFWQAKNVSLDGVEWVSVTDDNTRMRMVQNNELDTAIFVPF 246
           AF   EW+   RV++  N ++W  K  ++  V +  +TD NTR+  + +  +D  + VP 
Sbjct: 198 AFRFAEWKANQRVVVTANSDYWDGK-PAVQNVVFRPITDGNTRVAEMLSGGIDAMVEVPP 256

Query: 247 SRVEELK-KDKNVVIHADPSTREDHLLINHEHGLLAKPEVRQALDMAIDKQSLVKTATYG 305
             V+  K K     ++        ++++N +        VRQA++ AI+KQSL      G
Sbjct: 257 DTVKLFKEKSDRFRLYQTTGPHVWYVMLNTQVPPFNDVRVRQAVNYAINKQSLTDKILQG 316

Query: 306 QGTVAYSYIPKGSLYHYANNLQ---RPYDPTAAKKLLEQAGAKDLKLNYVVNAGNEA--- 359
              VA   IP+   +++A N +    PYDPT A+ LL+ AGA+   L + V  G      
Sbjct: 317 SADVAEGPIPRA--FNWAANKEVTPYPYDPTKARALLKAAGAEGTTLTFYVAEGGSGMLD 374

Query: 360 DEQIAVIIKDQLAKVGVTANLQKVDPTQSWQML-------VDGEYDISVMYWTNDILDPD 412
              +A  I+  L  VG+  +LQ    T  W          +D    ++ M W  +  DPD
Sbjct: 375 PIPMATAIQADLKAVGLNVSLQ----TYEWNTYLSKVNAGLDNHTHMAEMAWMTN--DPD 428

Query: 413 QKTTFVLGHDT-------NQNYMTRYKNDKVKALVAQARIEADPVKREQMYVELQKLAKQ 465
                 L  D        N  Y   Y N +V  L+ QAR+  D   R  +Y ++Q+L   
Sbjct: 429 TLPFLTLRTDAWPKKGGFNSGY---YSNPQVDNLLQQARMTTDTATRAALYRQVQQLVHD 485

Query: 466 DVNWIDLYYSPYINISRKNVSNFLQNPLGRFTLEEVVK 503
           D  WI +       ++   + +F   P     L  V K
Sbjct: 486 DAPWIFVANWKQNAVTSTRIQHFALQPNFNLLLNRVTK 523