Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  177 bits (449), Expect = 3e-49
 Identities = 99/309 (32%), Positives = 169/309 (54%), Gaps = 8/309 (2%)

Query: 7   RFVLYRPLQLLPVLFGISLITFVLVRSIPGDPARALLGSRSTPDALLKIRAQYGLDQPLW 66
           +F+  R  + +P +  +  I+F L+R  PG+P  +       P+ +  I A+YGLD+P+ 
Sbjct: 3   KFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS--ERPLPPEVMANINAKYGLDKPVS 60

Query: 67  LQYFYFLKNLLKGDLGQSLLYKVDALKLIVTRIEPTLVLV-LGSVVLALLIAVPLATFAA 125
            QY  +L N+++GD G S  YK   +  ++    P  V + L + V  +++ V + T AA
Sbjct: 61  EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA 120

Query: 126 RNKGGWADNLIRVFTTVGLGMPAFWLGLMLILLLSVQWGLFPVSGYGRTWLDKA-HHMVL 184
             +  W D  I     +G+ MP+F L  +LI + ++Q+ LFP  G    W D    +M L
Sbjct: 121 LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG----WQDGGFEYMAL 176

Query: 185 PCLTIALALSAVLVRNLRASMLMELQADHVTAARARGLLEAAVFRRHVLPNSLVPAVNLL 244
           P L ++L   A   R  R SM+  L ++ +  ARA+GL    +  +H L  +L+P V+ +
Sbjct: 177 PVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYM 236

Query: 245 AVNIGWLISGTVVIESLFAIPGIGQLLVRGIFTRDYMVVQGVAMVLACATVIVNFIADVV 304
                 +I+G+VVIE++F +PGIG+L V   F RDY +V GV +++    ++ N I D++
Sbjct: 237 GPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDIL 296

Query: 305 TVALDPRVK 313
              +DP+++
Sbjct: 297 LAYIDPKIR 305