Pairwise Alignments

Query, 363 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 16/152 (10%)

Query: 197 AVIEFAVLTSLRQEEICMLRIEDIDLERRVMLVRDRKHPTEKLGNHGEVPV--LDDFVEP 254
           A++E    T LR  E+  L +E++ L + V+ V   K   E+L   GE  +  ++ F++ 
Sbjct: 141 AMLELLYATGLRVTELVSLTMENMSLRQGVVRVMG-KGGKERLVPMGENAIEWIETFLQQ 199

Query: 255 ITKAMSGRKTGRLFPYAPRSVSASFTR-----------ACRALGIDDLRFHDLRHTAATD 303
               + G +T  +    P S     TR               + ++ L  H LRH  AT 
Sbjct: 200 GRSLLLGEQTSDIV--FPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLRHAFATH 257

Query: 304 LFTRELDIEAVSLFTGHKDWKMLRRYTHIKAE 335
           L     D+  V +  GH D    + YTH+  E
Sbjct: 258 LLNYGADLRVVQMLLGHSDLSTTQIYTHVATE 289