Pairwise Alignments

Query, 229 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 254 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  122 bits (305), Expect = 8e-33
 Identities = 74/205 (36%), Positives = 121/205 (59%), Gaps = 8/205 (3%)

Query: 29  DDPWESVNRPIFTFN-DTVDTYALKPLAQGYQFVTPQFVQDGIHNFFRNIGDVGNLANNV 87
           +DP ES NR ++T N D +D Y ++P++  Y    P+ V+ GI NF  N+ +  ++ NN+
Sbjct: 38  NDPLESFNRQMWTINYDYLDPYVVRPVSLFYVGYVPKPVRSGIANFLSNLDEPASMVNNL 97

Query: 88  LQLKPHNAGVDTARLLVNTTFGVLGFIDVGTKMGLQR-SDEDFGQTLGYWGVGSGPYVML 146
           L      A     R  +NT+FG+LG ID+ ++ G+++  D+ F   +G++GVG+GPY+M+
Sbjct: 98  LMGNGTKAVDHFNRFWINTSFGLLGLIDIASEAGIKKYDDKAFSDAVGHYGVGNGPYLMV 157

Query: 147 PLLGPSTLRDAPSKYVDSYTQPYRYMNDIGWRNSTFGLNIVDTRASLLDSEKLI--TGDK 204
           P  GP T+R+  +  VD    P  Y+N I      + L  ++TRA+L+  E L+  + D 
Sbjct: 158 PGYGPYTVREV-TDVVDGMYFPLAYLN-IWAGVGKWALEGMETRAALVSQEALLQDSPDP 215

Query: 205 YTFIRNAYLQNREFKVKDGKVVDDF 229
           Y+  R+AYLQ + FK +    VDD+
Sbjct: 216 YSLARDAYLQRQAFKAE--IQVDDY 238