Pairwise Alignments

Query, 414 a.a., multidrug ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 410 a.a., lipoprotein releasing system transmembrane protein LolE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  265 bits (677), Expect = 2e-75
 Identities = 146/411 (35%), Positives = 235/411 (57%), Gaps = 12/411 (2%)

Query: 7   IFIGTRYTRAKRRNRFVSFISMTSMIGLALGVLAMIVVLSVMNGFQREMSSRILGMVPHA 66
           +++G RY RA++ N F SFI++ ++ G+ LGV A+IVV SVMNG + ++  RILG VP  
Sbjct: 7   LYVGYRYWRARKANAFASFITLFAVSGIFLGVAALIVVSSVMNGLEGQLKQRILGAVPQL 66

Query: 67  TIVGVNPIDDWQPVAAAAMKNPQVTAAVPFTQMDGMFSYKGAMQPIEISGIDPAQEGKVS 126
           T+    P+ DW   A      P V    P      M      ++ +++ G+ P    K+S
Sbjct: 67  TVYTKAPLSDWTIAAEKLTMLPGVQGVTPSVSTQAMVQSAANIRAVQVFGVFPELAEKLS 126

Query: 127 IVAQHIVRGKLDDLKPGEFGVVVGEITARRFRLNVGDKLTLIVPE-ISTAPGGITPRMQR 185
            VAQH   G   +L  G++ V++G   AR+ +++ GD + L+  + +  +P G  P  ++
Sbjct: 127 AVAQHTYSGAFSELTSGQYQVILGSELARQLKVSPGDTVRLLSGDGVVYSPLGPVPSQRK 186

Query: 186 LNVVGIFKVGAELDGSMAMIHMADAAEIQHWQPNQVQSVRLAVKDLYAAPKVSSDIAASL 245
             V  +F++G+++D  +A +H  DA  +     +++  +RL + D + AP ++ D+   L
Sbjct: 187 FLVSAVFEMGSQVDAGVAYVHYQDAKRLMRQPSDEINQLRLYLNDPFTAPALAKDVQQIL 246

Query: 246 ---GAAYKPDDWTHTQGSLFSAMKMEKTMIGLLLLMIVAVAAFNIIATLIMVVNDKGADI 302
              G      DW  T G LFSA+KMEK M+ L+L +IVAVAAFNI++ L+M+V DK  D+
Sbjct: 247 TAQGIEATTSDWRDTYGHLFSAVKMEKNMMSLMLSLIVAVAAFNIVSALVMMVVDKTTDV 306

Query: 303 AILRTIGATPRQIMAIFMVQGTVIGIVGTLIGGVLGVIAALNVSELVGWVERVTGQHIFS 362
           A+L+T G     +M IF+VQG +  ++G  +G V+G++  LN++ L+       G  I  
Sbjct: 307 AVLKTQGLRTSAVMGIFVVQGLLNAVLGLALGLVVGILITLNLNGLMA----TLGISILG 362

Query: 363 SDVYFVSNLPSELQGGDVVLICTAGFVLSFLATLYPAYRAAKIEPAHALRY 413
           +       LP +L  G + LI     V++ +ATLYPA RAA+++PA ALRY
Sbjct: 363 AG----QMLPVKLALGQLSLIIVGTLVVTLVATLYPALRAARVQPATALRY 409