Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1276 bits (3301), Expect = 0.0
 Identities = 637/1123 (56%), Positives = 841/1123 (74%), Gaps = 2/1123 (0%)

Query: 12   AAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFP 71
            A  K+  GNL GA+L+LAIAE A+A    TLL   D Q+A +L  E+  F+     L FP
Sbjct: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVAL-FP 73

Query: 72   DWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSSLVLD 131
            DWETLPYD FSPHQDIIS RI+ LY+LP L  G+ +VP++T L R +P  FLL  +L++ 
Sbjct: 74   DWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVK 133

Query: 132  IGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIET 191
             G    ++++R +LE S YR VD V+  GE+A RG+++DLFPMGS  P+RID FDDEI+T
Sbjct: 134  RGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDT 193

Query: 192  LRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSG 251
            +RTFDP+NQRSI ++D ++LLPA EFP    A+  F+ R+R+RF+       ++  +S G
Sbjct: 194  IRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKG 253

Query: 252  ITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDPSR 311
              PAGIEY+ PLFF+ + TLFDYLP ++Q+  +  +E+A + F  DV  RY++R +DP R
Sbjct: 254  TWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313

Query: 312  PLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDLAIQAKATQPLE 371
            PLLPP EL+L  ++ FA  K+ P+V  +   +E  AGR       LP LA++ +  +PL 
Sbjct: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373

Query: 372  ALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKSKERLAITIAPL 431
            AL  F   F G+++F+ ES GRRE LLELL+R+KLRP++ + +    +  E+ ++ +   
Sbjct: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433

Query: 432  DEGLLLDDPALALIAESPLFGQRVMQRRRREKRADA-NNDAVIKNLTELREGAPVVHIDH 490
            + G +  D  +ALI ES L G RV+QRRR++ R +  N+DAVI+NL EL+ G PVVHIDH
Sbjct: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493

Query: 491  GVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSE 550
            G+GRYLGLQTLE     +E++ +EY   AKLYVPV++L+LI+RY+G  +  A LH+LG E
Sbjct: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553

Query: 551  TWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAFEETPDQQTT 610
             W KA+RKAAE+VRDVAAELLD+YA+R  + G+ F   +  YATF A F FEET DQ   
Sbjct: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613

Query: 611  IEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNS 670
            I AV +DM   K MDRLVCGDVGFGKTEVAMRAAF+A   GKQVA+LVPTTLLAQQH+ +
Sbjct: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673

Query: 671  FRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLVII 730
            FRDRFA+ P+ VEV+SRFKSAKE    + D+A+GK+DI++GTHKLLS +++  +LGL+I+
Sbjct: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733

Query: 731  DEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRT 790
            DEEHRFGVRQKE++KA+R++VDILTLTATPIPRTLNMA+SGMRDLSIIATPPARRL+++T
Sbjct: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793

Query: 791  FVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRER 850
            FV +   S ++EA+LRE++RGGQVY+LHN V+TI+K AADL +LVPEARI + HGQMRER
Sbjct: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853

Query: 851  ELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHH 910
            ELE+VM+DFYH+RFN+L+ +TIIETGIDVP+ANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913

Query: 911  QAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQ 970
            QAYAYLLTPP + IT DA KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLG+ QSGQIQ
Sbjct: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973

Query: 971  AVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLPDVHARLILYK 1030
            +VGFTLYMEMLE+AV+A++ G++P LD  L    E+ +RLPAL+PEEY+PD++ RL +YK
Sbjct: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033

Query: 1031 RIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQGGRIE 1090
            +IAS   ++ L +L+VE+IDRFG LP+   NL+ +  LKL A +L ++K++A  +GG +E
Sbjct: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093

Query: 1091 FEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEER 1133
            F     ++P+ L+KL+Q QP     +G T  KF +P+     R
Sbjct: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSAR 1136